Alternatives and similar repositories for ArrowSAM

Users that are interested in ArrowSAM are comparing it to the libraries listed below

• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• JaneliaSciComp / nextflow-spark
  ☆15Updated 10 months ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆28Updated 5 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 8 months ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆86Updated last year
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated 2 months ago
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆59Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated 2 months ago
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆36Updated last year
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated last year
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 8 months ago
• ncbi / magicblast
  ☆36Updated 9 months ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• BilkentCompGen / tardis
  Toolkit for automated and rapid discovery of structural variants
  ☆24Updated 2 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆34Updated 10 months ago
• Illumina / Isaac3
  Aligner for sequencing data
  ☆18Updated 8 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated this week
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• DecodeGenetics / popvcf
  Lossless VCF compression
  ☆21Updated 3 years ago
• jkbonfield / fqzcomp
  Fastq compression tool
  ☆17Updated 6 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆25Updated last month
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 8 months ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 7 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• broadinstitute / wdl
  Workflow Description Language - Specification and Implementations
  ☆27Updated 6 years ago