abs-tudelft / ArrowSAM
Genomics datastructures using Apache Arrow
☆21Updated 4 years ago
Alternatives and similar repositories for ArrowSAM:
Users that are interested in ArrowSAM are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- ☆30Updated 8 years ago
- WDL tools for parsing, type-checking, and more☆25Updated this week
- Rust wrapper of the BWA C API☆17Updated 3 years ago
- Substring index for paths in a graph☆60Updated 3 weeks ago
- ☆14Updated 2 years ago
- Next generation sequencing (NGS/HTS) tools.☆18Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- a string to graph aligner☆41Updated 8 years ago
- Structural variant pipeline☆17Updated 4 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- GBWT-based handle graph☆31Updated last week
- SQL-like query language for the SAM/BAM file format☆28Updated last year
- Create WDL documentation using Markdown.☆27Updated 3 weeks ago
- High-level API for storing and querying sequence variant data☆20Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- A crate for working with genomics chain files.☆11Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 weeks ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Scalable mpi aligner base on BWA☆7Updated 4 years ago