abs-tudelft / ArrowSAM
Genomics datastructures using Apache Arrow
☆21Updated 4 years ago
Alternatives and similar repositories for ArrowSAM:
Users that are interested in ArrowSAM are comparing it to the libraries listed below
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- NGS duplicate marking☆19Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- This BLENDER has been sunsetted☆16Updated 6 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- A crate for working with genomics chain files.☆11Updated 3 months ago
- Nextflow language support for Visual Studio Editor☆34Updated this week
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last week
- CRAM format specification and java API for read data.☆59Updated 6 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Annotating principal splice isoforms☆14Updated 6 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Updated last year
- Integrated Variant Caller☆17Updated 7 years ago