abs-tudelft / ArrowSAMLinks
Genomics datastructures using Apache Arrow
☆21Updated 4 years ago
Alternatives and similar repositories for ArrowSAM
Users that are interested in ArrowSAM are comparing it to the libraries listed below
Sorting:
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 4 months ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 4 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- A fast and memory-efficient k-mer counter with GPU-support☆36Updated 4 years ago
- A better, faster way to count guides in CRISPR screens.☆32Updated 3 months ago
- NGS duplicate marking☆19Updated 4 years ago
- ☆26Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 4 months ago
- WDL tools for parsing, type-checking, and more☆25Updated 3 months ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated last month
- ☆15Updated 3 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Simulating the expected output from a GWAS with a given causal model.☆11Updated 4 years ago
- Rust wrapper of the BWA C API☆18Updated last month
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Updated 6 years ago
- Annotating principal splice isoforms☆14Updated 9 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Updated 7 years ago
- WDL plugin for pytest☆48Updated last year