Genomics datastructures using Apache Arrow
☆21Nov 19, 2020Updated 5 years ago
Alternatives and similar repositories for ArrowSAM
Users that are interested in ArrowSAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Fast SAM/BAM sorter.☆12Updated this week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Workflow for preprocessing cfDNA samples.☆14Nov 11, 2024Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 7 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆23Aug 13, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 6 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆33Apr 19, 2020Updated 6 years ago
- A highly precise algorithmic pipeline for accurate mapping of NGS reads from highly homologous regions☆11Updated this week
- ORF Quantification pipeline for Alternative Splicing☆17May 11, 2021Updated 5 years ago
- MockGPT uses the open-source large models provided by Ollama to serve as OpenAI GPTs, for application in various AI software. MockGPT用Oll…☆13Aug 29, 2025Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 7 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆31Jan 21, 2026Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated 3 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- Create QC and summary reports for Alevin output☆31Jul 21, 2026Updated 3 months ago
- ☆11Apr 25, 2024Updated 2 years ago