ridgelab / Kmer-SSR
Fast, Accurate, and Complete SSR Detection in Genomic Sequences
☆11Updated 4 years ago
Alternatives and similar repositories for Kmer-SSR:
Users that are interested in Kmer-SSR are comparing it to the libraries listed below
- Archived version 1.0.2☆16Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆16Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆10Updated 4 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- ☆30Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 10 months ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- ☆26Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 4 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago