ridgelab / Kmer-SSRLinks
Fast, Accurate, and Complete SSR Detection in Genomic Sequences
☆11Updated 4 years ago
Alternatives and similar repositories for Kmer-SSR
Users that are interested in Kmer-SSR are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆30Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Archived version 1.0.2☆16Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Convert HAL to VG☆22Updated 9 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- ☆10Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago