medvedevgroup / vargenoLinks
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
☆20Updated 6 years ago
Alternatives and similar repositories for vargeno
Users that are interested in vargeno are comparing it to the libraries listed below
Sorting:
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- This is the Haplotypo repository☆20Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- ☆11Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆20Updated 3 months ago
- Pan gGnome Viewer☆10Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- ☆12Updated last month
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆9Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago