BilkentCompGen / tardisLinks
Toolkit for automated and rapid discovery of structural variants
☆22Updated last year
Alternatives and similar repositories for tardis
Users that are interested in tardis are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- reference free variant assembly☆33Updated 2 years ago
- ☆14Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Call regions of homozygosity and make tentative UPD calls☆11Updated last month
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Master of Pores 2☆23Updated 8 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆23Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆26Updated 3 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Population-wide Deletion Calling☆35Updated 3 months ago
- Find Unique genomic Regions☆30Updated last week
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year