BilkentCompGen / tardis
Toolkit for automated and rapid discovery of structural variants
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tardis
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 3 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- ☆10Updated 12 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 10 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 2 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Updated last year
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- Master of Pores 2☆23Updated last year
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆25Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Updated 2 years ago
- ☆11Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago