BilkentCompGen / tardis
Toolkit for automated and rapid discovery of structural variants
☆22Updated last year
Alternatives and similar repositories for tardis:
Users that are interested in tardis are comparing it to the libraries listed below
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Population-wide Deletion Calling☆35Updated last week
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆11Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆25Updated 3 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- This is the Haplotypo repository☆20Updated 11 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 7 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago