BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
☆74Dec 4, 2024Updated last year
Alternatives and similar repositories for BAMscale
Users that are interested in BAMscale are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆37Jul 5, 2021Updated 4 years ago
- Publication quality NGS track plotting☆119Oct 10, 2025Updated 7 months ago
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆28Aug 7, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 4 months ago
- Ultraperformant reimplementation of SICER☆59Dec 1, 2025Updated 6 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 5 months ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Jupyter notebook based genomic data visualization toolkit.☆257May 25, 2026Updated 2 weeks ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated 11 months ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆147Oct 28, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago
- BAM Statistics, Feature Counting and Annotation☆155May 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated 2 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 2 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆99Jan 27, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bedfile perturbation tool☆17Mar 6, 2026Updated 3 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- The next version of bwa-mem☆837Oct 15, 2025Updated 7 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆369Jun 6, 2025Updated last year
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago