ITBE-Lab / MALinks
The Modular Aligner and The Modular SV Caller
☆46Updated last year
Alternatives and similar repositories for MA
Users that are interested in MA are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Population-wide Deletion Calling☆35Updated last month
- ☆28Updated last month
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆34Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last month
- Structural variant caller☆54Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago