asifrim / mrmosaicLinks
MrMosaic (Genomic Mosaic Structural Variant Caller)
☆15Updated 8 years ago
Alternatives and similar repositories for mrmosaic
Users that are interested in mrmosaic are comparing it to the libraries listed below
Sorting:
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- ☆35Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 5 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- SV clustering☆31Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- ☆51Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 3 months ago
- CADD-SV – a framework to score the effect of structural variants☆18Updated 3 weeks ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago