Alternatives and similar repositories for mrmosaic:

Users that are interested in mrmosaic are comparing it to the libraries listed below

• zzhang526 / MosaicHunter
  A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.
  ☆13Updated 3 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 7 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 7 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 6 months ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆15Updated last year
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆28Updated 4 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆28Updated 4 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• gagneurlab / splicemap
  ☆19Updated 3 months ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 5 years ago
• Genomicsplc / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆10Updated 5 years ago
• bioinf-jku / panelcn.mops
  CNV detection tool for targeted NGS panel data
  ☆16Updated 2 years ago
• broadinstitute / gnomad-mitochondria
  ☆12Updated 9 months ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated this week
• theodorc / Atlas-CNV
  Method to detect exonic CNVs in NGS Gene Targeted Panels
  ☆16Updated 5 years ago
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆14Updated 5 months ago
• molgenis / CoNVaDING
  Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…
  ☆21Updated 4 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated this week
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 3 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 3 years ago
• gedoardo83 / GARFIELD-NGS
  GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
  ☆17Updated 5 years ago
• RahmanTeam / CAVA
  CAVA (Clinical Annotation of VAriants)
  ☆14Updated 6 years ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated last month
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 8 years ago
• polyactis / Accucopy
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆15Updated 10 months ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 7 years ago
• pughlab / VisCap
  VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…
  ☆22Updated 5 years ago