Alternatives and similar repositories for hifihla

Users that are interested in hifihla are comparing it to the libraries listed below

• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆38Updated 8 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆80Updated 9 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 10 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 4 months ago
• yywan0913 / SVhawkeye
  ☆33Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆32Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆46Updated last month
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated last week
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 4 months ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated last month
• hitbc / gcSV
  ☆21Updated 10 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 10 months ago
• mcfrith / tandem-genotypes
  ☆50Updated last year
• MeHelmy / princess
  ☆83Updated 10 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated last month
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆36Updated 2 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆45Updated last year
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆25Updated last month
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆21Updated last year
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated 2 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆66Updated 2 months ago