ChaissonLab / vamos
VNTR annotation using motif selection
☆31Updated last month
Alternatives and similar repositories for vamos:
Users that are interested in vamos are comparing it to the libraries listed below
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆37Updated 2 weeks ago
- Variant annotation and merging pipeline☆31Updated 3 weeks ago
- ☆31Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- SV calling for diploid assemblies☆23Updated 10 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated last month
- ☆14Updated 9 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last week
- Detection and genotyping of structural variants☆18Updated 3 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- ☆34Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago
- ☆31Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Improved Phased Assembler☆27Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago