VNTR annotation using motif selection
☆44May 25, 2026Updated 3 months ago
Alternatives and similar repositories for vamos
Users that are interested in vamos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Jan 14, 2026Updated 7 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- ☆12Apr 18, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- ☆11Mar 4, 2025Updated last year
- A structural variant filtering and prioritization tool for long-read sequencing data☆45Updated this week
- ☆102Apr 22, 2024Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆144Jun 10, 2026Updated 2 months ago
- ☆130Updated this week
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 5 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- A complete diploid human genome☆158Aug 10, 2026Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 4 months ago
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆45Jul 16, 2026Updated last month
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 3 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆64Aug 21, 2026Updated last week
- PacBio BAM C++ library☆20Aug 14, 2023Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 7 months ago
- ☆68Apr 9, 2024Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated last month
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago