ChaissonLab / vamosLinks
VNTR annotation using motif selection
☆39Updated last week
Alternatives and similar repositories for vamos
Users that are interested in vamos are comparing it to the libraries listed below
Sorting:
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- ☆36Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- ☆50Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Tumor-normal variant calling workflow using HiFi reads☆24Updated 2 weeks ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆38Updated 5 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- ☆39Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆44Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- ☆46Updated 5 years ago
- ☆67Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- ☆31Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago