Alternatives and similar repositories for NanoRepeat

Users that are interested in NanoRepeat are comparing it to the libraries listed below

• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆36Updated last year
• UCSC-nanopore-cgl / margin
  ☆31Updated 2 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆56Updated 6 months ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆18Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆35Updated 6 years ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 11 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆39Updated 8 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated last month
• WGLab / LongReadSum
  ☆21Updated 3 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 3 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• yywan0913 / SVhawkeye
  ☆31Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• mcfrith / tandem-genotypes
  ☆48Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆33Updated 2 years ago
• tacorna / taco
  Multi-sample transcriptome assembly from RNA-Seq
  ☆24Updated 7 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 4 months ago
• PacificBiosciences / pbfusion
  ☆23Updated last month
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 4 months ago
• srbehera / DRAGEN_Analysis
  ☆33Updated last year
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated 4 months ago