WGLab / NanoRepeatLinks
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
☆20Updated 3 months ago
Alternatives and similar repositories for NanoRepeat
Users that are interested in NanoRepeat are comparing it to the libraries listed below
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- ☆33Updated 3 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 4 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- ☆37Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- Structural variant merging tool☆57Updated last year
- Working space for the GIAB TR benchmarking project☆23Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- ☆26Updated 2 months ago
- Structural variant caller☆55Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Variant annotation and merging pipeline☆40Updated 4 months ago
- ☆32Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year