NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
☆19Jan 13, 2026Updated 2 months ago
Alternatives and similar repositories for NanoRepeat
Users that are interested in NanoRepeat are comparing it to the libraries listed below
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆133Dec 8, 2025Updated 3 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆43Mar 12, 2026Updated last week
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Updated this week
- A customizable genetic variants file format converter.☆11Oct 7, 2025Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- VNTR annotation using motif selection☆40Mar 14, 2026Updated last week
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- ☆125Feb 22, 2026Updated 3 weeks ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 weeks ago
- A simple script to create a customizable html file from an AnnotSV output.☆20May 3, 2024Updated last year
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated last month
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆34Aug 18, 2024Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆71Nov 4, 2025Updated 4 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- sequence alignment. global, local, glocal.☆42Dec 21, 2016Updated 9 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- ☆13Dec 16, 2024Updated last year
- ☆13Jan 23, 2020Updated 6 years ago
- Scripts to design DropSynth oligos☆16Dec 2, 2020Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- ☆55Jan 11, 2023Updated 3 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆17Jul 23, 2019Updated 6 years ago
- Distributed and cloud computing framework for vg☆23Mar 11, 2026Updated last week