PacificBiosciences / pb-human-wgs-workflow-snakemakeLinks
DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
☆39Updated last year
Alternatives and similar repositories for pb-human-wgs-workflow-snakemake
Users that are interested in pb-human-wgs-workflow-snakemake are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆67Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆108Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Structural Variant Index☆75Updated 9 months ago
- A local-haplotagging-based small and structural variant caller☆80Updated 2 weeks ago
- ☆81Updated 6 months ago
- Simple pileup-based variant caller☆91Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆60Updated last week
- ☆49Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- ☆77Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- python plotly Circos from VCF☆39Updated last year
- Structural variant caller☆55Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆14Updated 7 months ago
- A battery of methylation tools for PacBio HiFi reads☆41Updated last week
- Show pangenome graphs in an easy way☆56Updated last month