Alternatives and similar repositories for pb-human-wgs-workflow-snakemake:

Users that are interested in pb-human-wgs-workflow-snakemake are comparing it to the libraries listed below

• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 3 months ago
• daewoooo / SVbyEye
  ☆77Updated 3 weeks ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• kjenike / panagram
  ☆61Updated last week
• MeHelmy / princess
  ☆79Updated 3 weeks ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 5 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆47Updated last year
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆50Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆34Updated 9 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 3 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆2Updated last month
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated 2 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated last month
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated last week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆61Updated 2 weeks ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆70Updated 3 weeks ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 6 months ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆31Updated 2 weeks ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆32Updated 2 months ago