Alternatives and similar repositories for pb-human-wgs-workflow-snakemake

Users that are interested in pb-human-wgs-workflow-snakemake are comparing it to the libraries listed below

• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated 2 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆56Updated 2 years ago
• MeHelmy / princess
  ☆80Updated 4 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 7 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 2 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated last month
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆107Updated last month
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆36Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆82Updated last week
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆65Updated 3 months ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 8 months ago
• PacificBiosciences / paraphase
  HiFi-based caller for highly similar paralogous genes
  ☆45Updated this week
• kjenike / panagram
  ☆63Updated last week
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆8Updated 5 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago