PacificBiosciences / pb-human-wgs-workflow-snakemake
DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
☆38Updated last year
Alternatives and similar repositories for pb-human-wgs-workflow-snakemake:
Users that are interested in pb-human-wgs-workflow-snakemake are comparing it to the libraries listed below
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- Simple pileup-based variant caller☆86Updated 10 months ago
- ☆79Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- ☆76Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- ☆48Updated 5 months ago
- Error correction of ONT transcript reads☆59Updated last year
- ☆61Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Structural Variant Index☆71Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- ☆43Updated 8 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 4 years ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- ☆22Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ☆76Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- ☆39Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆32Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago