PacificBiosciences / pbmm2Links
A minimap2 frontend for PacBio native data formats
☆205Updated last month
Alternatives and similar repositories for pbmm2
Users that are interested in pbmm2 are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- ☆136Updated 3 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 8 months ago
- A bioinformatics tool for working with modified bases☆220Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Long read / genome alignment software☆303Updated 11 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆309Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- ☆216Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- Structural Variant Identification Method using Long Reads☆177Updated 4 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆159Updated 7 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Updated 2 years ago
- ☆218Updated 9 months ago
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Constructing a pangenome gene graph☆196Updated 2 months ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆225Updated 3 months ago