A minimap2 frontend for PacBio native data formats
☆215Mar 4, 2026Updated 2 months ago
Alternatives and similar repositories for pbmm2
Users that are interested in pbmm2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆292Feb 4, 2025Updated last year
- Collection of tools for the analysis of CpG data☆111Jul 9, 2025Updated 9 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆250Dec 16, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read-based phasing of genomic variants, also called haplotype assembly☆415Dec 31, 2025Updated 4 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago
- software tools for haplotype assembly from sequence data☆231Feb 9, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆769Apr 15, 2026Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆136Dec 8, 2025Updated 5 months ago
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆126Mar 18, 2024Updated 2 years ago
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Pangenome-based genome inference☆167Apr 27, 2026Updated last week
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,166Apr 25, 2026Updated 2 weeks ago
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆390Apr 22, 2026Updated 2 weeks ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆183Apr 12, 2024Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆236Jul 9, 2025Updated 9 months ago
- diploid SNV caller for error-prone reads☆209Apr 26, 2024Updated 2 years ago
- Genome Pair Rapid Dotter☆68Sep 2, 2021Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆182Mar 25, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Sequence-to-graph mapper and graph generator☆477Aug 11, 2025Updated 8 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated last month