PacificBiosciences / pbmm2
A minimap2 frontend for PacBio native data formats
☆178Updated last month
Alternatives and similar repositories for pbmm2:
Users that are interested in pbmm2 are comparing it to the libraries listed below
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆215Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆137Updated last year
- ☆81Updated 2 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆256Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 8 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆130Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆194Updated last year
- Constructing a pangenome gene graph☆178Updated 6 months ago
- PASA software☆179Updated last year
- Genome browser and variant annotation☆289Updated this week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- ☆109Updated 3 weeks ago
- Nanopore data assembler☆140Updated 2 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆117Updated 10 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆113Updated 6 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆166Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆239Updated 2 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆252Updated last week
- A bioinformatics tool for working with modified bases☆163Updated last week
- Jasmine: SV Merging Across Samples☆190Updated 3 weeks ago
- software tools for haplotype assembly from sequence data☆214Updated 5 months ago
- Annotation and Ranking of Structural Variation☆228Updated this week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 2 months ago