PacificBiosciences / pb-metagenomics-toolsLinks
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
☆199Updated 4 months ago
Alternatives and similar repositories for pb-metagenomics-tools
Users that are interested in pb-metagenomics-tools are comparing it to the libraries listed below
Sorting:
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- ☆227Updated last month
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆213Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Pan-genome wide association studies☆205Updated last year
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- ☆230Updated 11 months ago
- BSR-Based Allele Calling Algorithm☆147Updated last week
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆207Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆163Updated 9 months ago
- ☆153Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 2 months ago
- A tool to circularize genome assemblies☆250Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆175Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆179Updated last month
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆283Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆244Updated 9 months ago
- Metagenomic classification of long-read sequencing data☆97Updated last month
- Filtering and trimming of long read sequencing data☆212Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆190Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago
- Nanopore data assembler☆163Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆131Updated last week