Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
☆206Jul 31, 2026Updated last month
Alternatives and similar repositories for pb-metagenomics-tools
Users that are interested in pb-metagenomics-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆232May 9, 2026Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 10 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆102Sep 10, 2026Updated 2 weeks ago
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆175Sep 20, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read alignment statistics for metagenomics☆407Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆281Mar 20, 2025Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated 2 weeks ago
- DAS Tool☆176May 2, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week
- Rapid comparison and dereplication of genomes☆358Sep 4, 2026Updated 3 weeks ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Sep 18, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for generating consensus long-read assemblies for bacterial genomes☆349Jul 24, 2026Updated 2 months ago
- Bioinformatics program inStrain☆193Mar 12, 2026Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆682Aug 7, 2026Updated last month
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Sep 9, 2026Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆176Sep 18, 2026Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆523Aug 5, 2026Updated last month
- Similarity networks of biosynthetic gene clusters☆179Apr 1, 2026Updated 5 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Updated this week
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆37Apr 10, 2026Updated 5 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆108Sep 18, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆951Apr 3, 2026Updated 5 months ago
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- Metagenomic classification of long-read sequencing data☆110Jan 22, 2026Updated 8 months ago