Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
☆204Jul 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for pb-metagenomics-tools
Users that are interested in pb-metagenomics-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆228May 9, 2026Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 8 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆102Jul 10, 2025Updated last year
- A complete pipeline for metagenomic analysis☆451Aug 11, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated 2 weeks ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- Rapid comparison and dereplication of genomes☆352Jul 16, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 9 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆185Mar 25, 2026Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆172Jul 6, 2026Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last week
- Similarity networks of biosynthetic gene clusters☆180Apr 1, 2026Updated 4 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated 11 months ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆37Apr 10, 2026Updated 4 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jul 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graph-based assembly phasing☆100Nov 25, 2025Updated 8 months ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- k-mer based assembly evaluation☆352Jul 6, 2026Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆948Apr 3, 2026Updated 4 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆382Aug 1, 2025Updated last year
- Metagenomic classification of long-read sequencing data☆107Jan 22, 2026Updated 6 months ago