PacificBiosciences / pb-metagenomics-tools
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
☆165Updated last week
Related projects: ⓘ
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆187Updated 3 weeks ago
- BSR-Based Allele Calling Algorithm☆129Updated last week
- Fast and accurately polish the genome generated by long reads.☆205Updated 10 months ago
- An updated pipeline for pangenome investigation☆260Updated 5 months ago
- A user-friendly workflow for phylogenomics☆197Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆186Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆304Updated 3 months ago
- ☆184Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆143Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆167Updated last month
- ☆139Updated last week
- Scan contig files against PubMLST typing schemes☆192Updated last year
- Processing pipeline for pan-genome visulization and exploration☆132Updated 11 months ago
- DAS Tool☆137Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆187Updated 3 weeks ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆226Updated this week
- Bacterial ribosomal RNA predictor☆218Updated last year
- fast phage annotation program☆144Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆212Updated 10 months ago
- Pan-genome wide association studies☆147Updated 3 months ago
- Rapid comparison and dereplication of genomes☆247Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆210Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆219Updated last year
- snipit: summarise snps relative to your reference sequence☆141Updated last month
- quality filtering tool for long reads☆275Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆189Updated 8 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆104Updated 9 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago