MGnify genome analysis pipeline
☆115Aug 10, 2026Updated this week
Alternatives and similar repositories for genomes-catalogue-pipeline
Users that are interested in genomes-catalogue-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Feb 13, 2020Updated 6 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An updated pipeline for pangenome investigation☆369Jul 2, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆229Jul 16, 2026Updated 3 weeks ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆61Apr 18, 2021Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆129Oct 30, 2023Updated 2 years ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆382Aug 1, 2025Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MicrobeRX☆17Aug 11, 2025Updated last year
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆272May 13, 2026Updated 2 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated 3 weeks ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆428May 20, 2026Updated 2 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆30Jul 21, 2022Updated 4 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 2 months ago
- A complete pipeline for metagenomic analysis☆451Updated this week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆420Aug 5, 2026Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆386Jul 17, 2026Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆252Jan 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- A comprehensive prokaryotic genome annotation pipeline☆91Jul 30, 2026Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆204Jul 31, 2026Updated last week
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆84Jul 24, 2026Updated 2 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆478Jul 15, 2026Updated 3 weeks ago