EBI-Metagenomics / genomes-catalogue-pipeline
MGnify genome analysis pipeline
☆101Updated this week
Related projects ⓘ
Alternatives and complementary repositories for genomes-catalogue-pipeline
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆118Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- Phage Annotation using Protein Structures☆87Updated last month
- Bioinformatics tool for Locus Visualisation☆72Updated 2 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆84Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆61Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆77Updated last month
- Pipeline for metabolic annotation of microbial genomes☆140Updated 4 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 7 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated 2 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆52Updated 3 months ago
- Woltka: a versatile meta'omic data classifier☆70Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- Fast and flexible ORF finder☆62Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆66Updated last year
- Metagenomic classification of long-read sequencing data☆61Updated this week
- CLI tool to annotate genes with KOfam☆72Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Find clustered hits from a BLAST search☆98Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆56Updated 2 months ago
- Open-source usearch☆100Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆145Updated 2 months ago
- ☆57Updated this week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆63Updated 3 weeks ago
- Bioinformatics Tools☆81Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated 8 months ago