EBI-Metagenomics / genomes-catalogue-pipeline
MGnify genome analysis pipeline
☆104Updated this week
Alternatives and similar repositories for genomes-catalogue-pipeline:
Users that are interested in genomes-catalogue-pipeline are comparing it to the libraries listed below
- Similarity networks of biosynthetic gene clusters☆91Updated this week
- Bioinformatics tool for Locus Visualisation☆83Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆77Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆126Updated this week
- Pipeline for metabolic annotation of microbial genomes☆142Updated 6 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆53Updated 5 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆86Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆149Updated 4 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆64Updated 2 weeks ago
- Find clustered hits from a BLAST search☆106Updated last month
- Download files from NCBI Entrez by accession☆114Updated 4 months ago
- Open-source usearch☆107Updated 7 months ago
- fast phage annotation program☆152Updated last month
- a tool for inferring species tree from sequencing reads☆146Updated last month
- CLI tool to annotate genes with KOfam☆73Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated 9 months ago
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆149Updated 8 months ago
- ☆46Updated 11 months ago
- Metagenomic classification of long-read sequencing data☆69Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Woltka: a versatile meta'omic data classifier☆71Updated 3 months ago
- Bioinformatics program inStrain☆155Updated 8 months ago
- DDBJ Fast Annotation and Submission Tool☆78Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆106Updated last week
- Bioinformatics Tools☆81Updated this week