MGnify genome analysis pipeline
☆115Sep 9, 2026Updated last week
Alternatives and similar repositories for genomes-catalogue-pipeline
Users that are interested in genomes-catalogue-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Feb 13, 2020Updated 6 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Updated this week
- Rapid comparison and dereplication of genomes☆357Sep 4, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Read alignment statistics for metagenomics☆406Jul 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 2 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆61Apr 18, 2021Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆130Oct 30, 2023Updated 2 years ago
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- MicrobeRX☆17Aug 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622May 20, 2026Updated 4 months ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 4 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆187Jul 17, 2026Updated 2 months ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆433Updated this week
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆30Jul 21, 2022Updated 4 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆422Sep 10, 2026Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆390Aug 19, 2026Updated last month
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆253Jan 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆222Apr 24, 2026Updated 4 months ago
- A comprehensive prokaryotic genome annotation pipeline☆93Sep 4, 2026Updated 2 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆206Jul 31, 2026Updated last month
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆481Jul 15, 2026Updated 2 months ago