Serka-M / mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
☆38Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for mmlong2
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- ☆17Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- whole genome MLST analysis☆38Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Reorients assembled microbial sequences☆98Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- IS mapping software☆51Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- CDCgov/mycosnp-nf☆37Updated 2 months ago
- Recombination-free trees☆56Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆40Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆49Updated last month
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- Order and orientation of complete bacterial genomes☆27Updated 11 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆71Updated 3 months ago
- Gene Absence Presence Identification tool.☆26Updated last year