Alternatives and similar repositories for BiG-SCAPE:

Users that are interested in BiG-SCAPE are comparing it to the libraries listed below

• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated this week
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆112Updated 5 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆71Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆145Updated last month
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆80Updated 5 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆102Updated last month
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆97Updated 2 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆134Updated 2 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆117Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆166Updated last month
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆92Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆61Updated 4 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆64Updated this week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated last year
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆141Updated 3 weeks ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆49Updated 3 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆54Updated 9 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆149Updated last week
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆87Updated this week
• Carrion-lab / bacLIFE
  ☆45Updated 2 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆161Updated 3 months ago
• rcedgar / usearch12
  Open-source usearch
  ☆110Updated 10 months ago
• phac-nml / staramr
  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
  ☆146Updated 4 months ago
• EBI-Metagenomics / mettannotator
  ☆70Updated this week
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 weeks ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆78Updated this week
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆76Updated last week
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆84Updated last week
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆104Updated 2 weeks ago
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆95Updated 8 months ago