PacificBiosciences / HiFi-16S-workflowView external linksLinks
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
☆92Jul 10, 2025Updated 7 months ago
Alternatives and similar repositories for HiFi-16S-workflow
Users that are interested in HiFi-16S-workflow are comparing it to the libraries listed below
Sorting:
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Feb 2, 2026Updated last week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆199Feb 2, 2026Updated 2 weeks ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆117Jan 8, 2026Updated last month
- Collection of tools for the analysis of CpG data☆106Jul 9, 2025Updated 7 months ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Sep 8, 2022Updated 3 years ago
- ☆13Apr 5, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆20Dec 24, 2020Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 4 months ago
- Just another minhash implementation.☆12Updated this week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Nov 24, 2025Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆71Dec 17, 2024Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆232Jan 20, 2026Updated 3 weeks ago
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated 2 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 6 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Feb 9, 2026Updated last week
- ☆36Nov 20, 2023Updated 2 years ago
- Extremely fast and accurate Nanopore demultiplexing☆78Jan 26, 2026Updated 3 weeks ago
- viralVerify: viral contig verification tool☆74Aug 22, 2021Updated 4 years ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated last week
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆24Nov 28, 2025Updated 2 months ago
- chloroplast genome assembly using long reads data☆14Jul 8, 2025Updated 7 months ago
- ☆15Dec 16, 2024Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated last week
- ☆58Mar 14, 2024Updated last year
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- A complete pipeline for metagenomic analysis☆440Jan 21, 2026Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Dec 13, 2025Updated 2 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Dec 17, 2025Updated last month
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆25Jan 25, 2025Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Dec 1, 2023Updated 2 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated this week