PacificBiosciences / HiFi-16S-workflowLinks
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
☆77Updated 4 months ago
Alternatives and similar repositories for HiFi-16S-workflow
Users that are interested in HiFi-16S-workflow are comparing it to the libraries listed below
Sorting:
- Metatranscriptomics Tutorial☆62Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 2 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆40Updated 3 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Metagenomic classification of long-read sequencing data☆85Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Course material for the metagenomics course☆44Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- Development version of Easyfig☆97Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆59Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Updated 11 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆88Updated 11 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆38Updated last month