Nextflow pipeline to analyze PacBio HiFi full-length 16S data
☆102Sep 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for HiFi-16S-workflow
Users that are interested in HiFi-16S-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆206Jul 31, 2026Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 8 months ago
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆57Mar 14, 2024Updated 2 years ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated 11 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 10 months ago
- REference Sequence annotation and CuRatIon Pipeline☆102Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆232May 9, 2026Updated 4 months ago
- Collection of tools for the analysis of CpG data☆114Jul 9, 2025Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- ☆36Aug 7, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- ☆19Dec 16, 2024Updated last year
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆14Sep 21, 2026Updated last week
- ☆12Sep 27, 2023Updated 3 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 6 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- More scalable dereplication for metagenome assembled genomes☆88Sep 9, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆57May 8, 2026Updated 4 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆424Sep 10, 2026Updated 2 weeks ago
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆76Dec 17, 2024Updated last year
- ☆19Jul 15, 2026Updated 2 months ago
- ☆88Aug 18, 2026Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆253Updated this week
- PuntSeq - Chasing the microbial diversity of Cambridge's freshwater☆20Nov 12, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 7 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆127Mar 18, 2024Updated 2 years ago
- Open-source usearch☆143Updated this week