PacificBiosciences / HiFi-16S-workflowLinks
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
☆88Updated 5 months ago
Alternatives and similar repositories for HiFi-16S-workflow
Users that are interested in HiFi-16S-workflow are comparing it to the libraries listed below
Sorting:
- Development version of Easyfig☆102Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆96Updated 2 weeks ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated this week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆200Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆147Updated last month
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated 8 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆163Updated 2 weeks ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆139Updated 2 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week