xfengnefx / hifiasm-metaLinks
hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
☆69Updated last month
Alternatives and similar repositories for hifiasm-meta
Users that are interested in hifiasm-meta are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Gene-flank analysis tool☆34Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- k-mer learning materials☆83Updated 11 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- ☆30Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆29Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- orthology assignment using phylogenetic and network analyses☆53Updated 2 months ago
- Graph-based assembly phasing☆90Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆92Updated this week
- ☆68Updated 2 weeks ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago