xfengnefx / hifiasm-meta
hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
☆63Updated 2 months ago
Alternatives and similar repositories for hifiasm-meta:
Users that are interested in hifiasm-meta are comparing it to the libraries listed below
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated this week
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A program for detection of tRNA genes☆60Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 9 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- whole genome MLST analysis☆41Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- perSVade: personalized Structural Variation detection☆38Updated 3 weeks ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago