xfengnefx / hifiasm-metaLinks
hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
☆69Updated last week
Alternatives and similar repositories for hifiasm-meta
Users that are interested in hifiasm-meta are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- ☆66Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- ☆29Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- k-mer learning materials☆80Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- orthology assignment using phylogenetic and network analyses☆47Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- ☆20Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Genome-Genome circle synteny☆25Updated last year