Magdoll / MagPhaseLinks
Phasing for metagenomics using PacBio long reads
☆16Updated 4 years ago
Alternatives and similar repositories for MagPhase
Users that are interested in MagPhase are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- ☆25Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- MAG Circularization Method☆32Updated 2 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Gene-flank analysis tool☆36Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Discover and annotate the virome☆58Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- Split Kmer Analysis☆67Updated 3 years ago