kevsilva / StrainFLAIR
Strain-level abundances estimation in metagenomic samples using variation graphs
☆25Updated 2 years ago
Alternatives and similar repositories for StrainFLAIR:
Users that are interested in StrainFLAIR are comparing it to the libraries listed below
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- strain-level analysis tools☆36Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated last month
- De novo VIral Genome Annotator☆21Updated 7 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- ☆22Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- ☆20Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- ☆16Updated 4 years ago