secastel / phaser
phasing and Allele Specific Expression from RNA-seq
☆112Updated 8 months ago
Alternatives and similar repositories for phaser:
Users that are interested in phaser are comparing it to the libraries listed below
- Bayesian genotyper for structural variants☆130Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- Copy number calling and variant classification using targeted short read sequencing☆133Updated 2 weeks ago
- ABRA2☆92Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆124Updated this week
- WisecondorX — An evolved WISECONDOR☆97Updated 6 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆108Updated last month
- BAM Statistics, Feature Counting and Annotation☆148Updated last month
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Software program for checking sample matching for NGS data☆130Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆104Updated 11 months ago
- Structural variation and indel detection by local assembly☆244Updated last month
- Jasmine: SV Merging Across Samples☆209Updated 3 months ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated 6 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 7 months ago