phasing and Allele Specific Expression from RNA-seq
☆124Mar 21, 2026Updated 5 months ago
Alternatives and similar repositories for phaser
Users that are interested in phaser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- software tools for haplotype assembly from sequence data☆233Feb 9, 2025Updated last year
- ☆27May 8, 2022Updated 4 years ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 3 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated last year
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- Graph realignment tools for structural variants☆171Dec 8, 2022Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Error correction of ONT transcript reads☆58Sep 9, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- cython + htslib == fast VCF and BCF processing☆449Sep 10, 2026Updated last week
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 5 months ago
- ☆39Apr 25, 2023Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BAM Statistics, Feature Counting and Annotation☆155Sep 10, 2026Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆430Updated this week
- Phased structural variant discovery in pangenomes☆43Updated this week
- ☆85Mar 3, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last week
- GTEx & TOPMed data production and analysis pipelines☆411Sep 14, 2025Updated last year
- Structural variant toolkit for VCFs☆423Sep 8, 2026Updated last week
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago