phasing and Allele Specific Expression from RNA-seq
☆125Mar 21, 2026Updated 7 months ago
Alternatives and similar repositories for phaser
Users that are interested in phaser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- software tools for haplotype assembly from sequence data☆234Feb 9, 2025Updated last year
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated 2 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last month
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆63Sep 6, 2025Updated last year
- ☆27May 8, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- ☆13Sep 15, 2025Updated last year
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 8 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 2 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆433Oct 9, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- cython + htslib == fast VCF and BCF processing☆451Sep 10, 2026Updated last month
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 3 weeks ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 6 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆78Jun 12, 2020Updated 6 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆155Oct 22, 2026Updated last week
- Error correction of ONT transcript reads☆58Oct 17, 2026Updated last week
- A fast and memory-efficient method for haplotype assembly from long gapless reads.☆10Jun 11, 2018Updated 8 years ago
- ☆85Mar 3, 2025Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 8 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆193Jul 21, 2026Updated 3 months ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago