funpopgen / CaVEMaNLinks
Causal Variant Evidence Mapping with Non-parametric resampling
☆12Updated 4 years ago
Alternatives and similar repositories for CaVEMaN
Users that are interested in CaVEMaN are comparing it to the libraries listed below
Sorting:
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Snakemake tutorial materials☆19Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- DriverPower☆26Updated 10 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- ☆23Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆14Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Computational Framework to reconstructing tumor clone structures☆15Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- Computes various SV statistics☆14Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆18Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago