funpopgen / CaVEMaNLinks
Causal Variant Evidence Mapping with Non-parametric resampling
☆12Updated 5 years ago
Alternatives and similar repositories for CaVEMaN
Users that are interested in CaVEMaN are comparing it to the libraries listed below
Sorting:
- Snakemake tutorial materials☆19Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- DriverPower☆26Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Structural variant pipeline☆17Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 8 years ago
- Computes various SV statistics☆14Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- DMR Identification Tool☆34Updated 2 years ago
- ☆25Updated 7 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- ☆11Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year