funpopgen / CaVEMaNLinks
Causal Variant Evidence Mapping with Non-parametric resampling
☆12Updated 4 years ago
Alternatives and similar repositories for CaVEMaN
Users that are interested in CaVEMaN are comparing it to the libraries listed below
Sorting:
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Snakemake tutorial materials☆19Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated 4 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- A transposition caller.☆10Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆29Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆22Updated last year
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 4 years ago
- ☆25Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- DriverPower☆26Updated 5 months ago