Visualization tool for (meta)genome assembly graphs
☆49Jul 21, 2026Updated this week
Alternatives and similar repositories for MetagenomeScope
Users that are interested in MetagenomeScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid & standardized genome annotation using protein structural information☆70Jul 2, 2026Updated 3 weeks ago
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 2 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- ☆33Updated this week
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Remove human reads from a sequencing run☆51Jun 29, 2026Updated 3 weeks ago
- An extensible and performant aligner and read mapper☆99Updated this week
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 4 months ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Updated this week
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Jun 10, 2026Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 5 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Jul 16, 2026Updated last week
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- Assembling phage particles one protein at a time☆16May 4, 2026Updated 2 months ago
- ☆15Dec 3, 2024Updated last year
- ☆23Jul 8, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- sunburst plots for taxonomy - working to update Krona☆45Sep 22, 2025Updated 10 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- Genome browser 🧬👀🚀☆34Jun 14, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆224May 9, 2026Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆150Jun 10, 2026Updated last month
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Plasmid analysis using rearrangement distances☆56Updated this week
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 6 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week