marbl / MetagenomeScopeLinks
Visualization tool for (meta)genome assembly graphs
☆23Updated last year
Alternatives and similar repositories for MetagenomeScope
Users that are interested in MetagenomeScope are comparing it to the libraries listed below
Sorting:
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- blast, shmlast☆22Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆14Updated 2 months ago
- ☆45Updated 3 years ago
- Build sourmash databases for genbank.☆12Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- ☆32Updated 2 years ago
- Read contamination removal☆25Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year