marbl / MetagenomeScopeLinks
Visualization tool for (meta)genome assembly graphs
☆22Updated this week
Alternatives and similar repositories for MetagenomeScope
Users that are interested in MetagenomeScope are comparing it to the libraries listed below
Sorting:
- transposable element typing pipeline☆19Updated last year
- Find Unique genomic Regions☆32Updated 2 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆19Updated 3 weeks ago
- Read contamination removal☆25Updated last year
- Implementation of ToL genome assembly workflows☆24Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆20Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- sunburst plots for taxonomy - working to update Krona☆42Updated 3 months ago
- Variant call verification☆16Updated 7 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Updated 3 weeks ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 8 months ago
- ☆45Updated last month
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month