Alternatives and similar repositories for MetagenomeScope

Users that are interested in MetagenomeScope are comparing it to the libraries listed below

• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• rrwick / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆8Updated 7 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• ukhsa-collaboration / PneumoCaT
  Pneumococcal Capsular Typing tool for NGS data
  ☆16Updated 4 years ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 6 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆16Updated 11 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• wdecoster / phasius
  ☆14Updated 2 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆39Updated 7 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 10 months ago
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 6 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 3 months ago
• imgag / plasmIDent
  ☆15Updated 10 months ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 5 months ago
• nluhmann / BlastFrost
  ☆45Updated 3 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• HKU-BAL / MegaPath-Nano
  MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…
  ☆14Updated 2 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 3 years ago
• carolzhou / multiPhATE2
  multiPhATE with comparative genomics
  ☆18Updated 3 years ago