marbl / MetagenomeScopeLinks
Visualization tool for (meta)genome assembly graphs
☆23Updated last year
Alternatives and similar repositories for MetagenomeScope
Users that are interested in MetagenomeScope are comparing it to the libraries listed below
Sorting:
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- Read contamination removal☆25Updated last year
- transposable element typing pipeline☆19Updated last year
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆18Updated 11 months ago
- Find Unique genomic Regions☆30Updated last week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated last month
- Variant call verification☆16Updated 4 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆29Updated 3 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 3 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 weeks ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆20Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆40Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- De novo VIral Genome Annotator☆23Updated last year
- ☆45Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago