Prioritize structural variants based on CADD scores
☆29May 7, 2020Updated 6 years ago
Alternatives and similar repositories for SVScore
Users that are interested in SVScore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆51Aug 27, 2019Updated 6 years ago
- Python package and routines for merging VCF files☆29Apr 1, 2021Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- ☆36Mar 2, 2021Updated 5 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆50May 27, 2025Updated last year
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- The first CHM1 paper (Li, 2014)☆25Jul 9, 2014Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32May 10, 2021Updated 5 years ago
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆53Updated this week
- ☆85Mar 3, 2025Updated last year
- SV clustering☆31Jul 5, 2021Updated 5 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Tools for processing and analyzing structural variants.☆35Sep 8, 2015Updated 10 years ago
- ☆29Feb 17, 2021Updated 5 years ago