Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
☆51Nov 13, 2023Updated 2 years ago
Alternatives and similar repositories for ngsLD
Users that are interested in ngsLD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- ☆49Jun 26, 2026Updated last month
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Program for analysing NGS data.☆263Mar 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sex assignment through coverage☆20May 23, 2025Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆26Sep 14, 2020Updated 5 years ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Jun 12, 2026Updated last month
- ☆107Oct 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆55Dec 15, 2025Updated 7 months ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 2 months ago
- Presentations from the course☆40Aug 28, 2023Updated 2 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 6 months ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 7, 2026Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆197Oct 15, 2025Updated 9 months ago
- An R interface for the ADMIXTOOLS software☆37Nov 24, 2025Updated 8 months ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- General tools for genomic analyses.☆393Mar 25, 2026Updated 4 months ago
- ☆26Aug 10, 2021Updated 4 years ago
- ☆19May 27, 2022Updated 4 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- ☆33Jun 28, 2026Updated last month
- Pipeline for GTseq genotyping and quality control☆16Jan 30, 2023Updated 3 years ago
- Tutorial for visualising admixture on a map☆25Jan 4, 2021Updated 5 years ago
- Sampling and inference of genealogies with recombination☆58Apr 10, 2026Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated 2 weeks ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 7 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- ☆16Jul 9, 2026Updated 2 weeks ago