nim wrapper for htslib for parsing genomics data files
☆158Dec 15, 2025Updated 3 months ago
Alternatives and similar repositories for hts-nim
Users that are interested in hts-nim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Nim Library for sequence (protein/nucleotide) bioinformatics☆22Aug 24, 2020Updated 5 years ago
- use the noise☆15Apr 15, 2020Updated 5 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 3 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- A wrapper for the cMPFIT library for the Nim programming language, https://vindaar.github.io/nim-mpfit/☆18Mar 18, 2025Updated last year
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 8 months ago
- DataFrame API written in Nim, enabling fast out-of-core data processing☆340Jun 9, 2021Updated 4 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆833Feb 10, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 5 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆148Feb 17, 2026Updated last month
- cython + htslib == fast VCF and BCF processing☆435Feb 23, 2026Updated last month
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆306Nov 14, 2025Updated 4 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- A port of ggplot2 for Nim☆188Feb 24, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- seqfu - Sequece Fastx Utilities☆126Mar 3, 2026Updated 3 weeks ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- plotly wrapper for nim-lang☆187Apr 9, 2024Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Interval data structure☆236Mar 18, 2026Updated last week
- Transcript quantification import with automatic metadata detection☆70Mar 3, 2026Updated 3 weeks ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- PDF document writer, written in nim lang☆185Nov 26, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- A pure Nim k-d tree implementation for efficient spatial querying of point data☆43Nov 10, 2020Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- The D4 Quantitative Data Format☆171Nov 28, 2025Updated 4 months ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Define and compose random variables☆46Apr 24, 2023Updated 2 years ago
- OpenStreetMap API Lib for Nim☆14May 17, 2022Updated 3 years ago