nim wrapper for htslib for parsing genomics data files
☆158May 2, 2026Updated 2 months ago
Alternatives and similar repositories for hts-nim
Users that are interested in hts-nim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Nim Library for sequence (protein/nucleotide) bioinformatics☆22Aug 24, 2020Updated 5 years ago
- use the noise☆15Apr 15, 2020Updated 6 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- genetic variant expressions, annotation, and filtering for great good.☆276May 12, 2026Updated last month
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- A wrapper for the cMPFIT library for the Nim programming language, https://vindaar.github.io/nim-mpfit/☆19Mar 18, 2025Updated last year
- fast easy interval overlapping for nim-lang☆30Jul 9, 2025Updated 11 months ago
- DataFrame API written in Nim, enabling fast out-of-core data processing☆342Jun 9, 2021Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆861May 2, 2026Updated 2 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 8 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- annotate a VCF with other VCFs/BEDs/tabixed files☆407Jun 16, 2026Updated 3 weeks ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 4 months ago
- cython + htslib == fast VCF and BCF processing☆445Jun 25, 2026Updated last week
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆326Apr 24, 2026Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- A port of ggplot2 for Nim☆188Feb 24, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- seqfu - Sequece Fastx Utilities☆128May 22, 2026Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 9 months ago
- plotly wrapper for nim-lang☆186Apr 9, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Interval data structure☆234Mar 18, 2026Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆72Jun 15, 2026Updated 3 weeks ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- PDF document writer, written in nim lang☆187Nov 26, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- A pure Nim k-d tree implementation for efficient spatial querying of point data☆43Nov 10, 2020Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 7 months ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Define and compose random variables☆46Apr 24, 2023Updated 3 years ago
- OpenStreetMap API Lib for Nim☆14May 17, 2022Updated 4 years ago