brentp / hts-nimLinks
nim wrapper for htslib for parsing genomics data files
☆157Updated 3 weeks ago
Alternatives and similar repositories for hts-nim
Users that are interested in hts-nim are comparing it to the libraries listed below
Sorting:
- useful command-line tools written to showcase hts-nim☆50Updated 5 years ago
- Nim Library for sequence (protein/nucleotide) bioinformatics☆22Updated 5 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 5 years ago
- fast easy interval overlapping for nim-lang☆29Updated 6 months ago
- use the noise☆15Updated 5 years ago
- genetic variant expressions, annotation, and filtering for great good.☆268Updated 3 weeks ago
- DNA kmer operations for nim☆14Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆298Updated last month
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆20Updated 6 months ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Updated last month
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- A string library☆82Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated 2 months ago
- ☆15Updated 5 years ago
- An introductory workshop to GWAS analysis using PLINK and R☆15Updated 10 years ago
- LoFreq Version 3☆27Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 10 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 2 months ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- horizontal pileup☆16Updated 3 years ago
- Convert genetic variants to minimal representation☆23Updated 8 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated 3 months ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 4 years ago