Alternatives and similar repositories for scDiff:

Users that are interested in scDiff are comparing it to the libraries listed below

• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆47Updated last week
• microsoft / zero-shot-scfoundation
  ☆56Updated 5 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 10 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆45Updated this week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆80Updated last month
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆35Updated 3 weeks ago
• jsxlei / scCLIP
  ☆27Updated 11 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• yulun-rayn / graphVCI
  This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…
  ☆15Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆19Updated 2 weeks ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆33Updated 4 months ago
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 5 months ago
• theislab / scTab
  ☆56Updated 5 months ago
• kimmo1019 / JAE
  Single cell joint embedding and modality prediction with autoencoder
  ☆9Updated 2 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆57Updated 3 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆55Updated 8 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆24Updated last year
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆28Updated 10 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 3 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆36Updated 5 months ago
• QuKunLab / MultiomeBenchmarking
  ☆41Updated last year
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆29Updated last week
• zhanglab-aim / EMGNN
  Explainable Multilayer Graph Neural Network for Cancer Gene Prediction
  ☆14Updated last year
• Genentech / sVAE
  ☆58Updated last year
• yhr91 / GEARS_misc
  ☆17Updated 4 months ago
• vandijklab / CINEMA-OT
  ☆29Updated 3 months ago
• melobio / Concerto-reproducibility
  ☆36Updated 2 years ago