Alternatives and similar repositories for CellPLM:

Users that are interested in CellPLM are comparing it to the libraries listed below

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆90Updated last month
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆68Updated 3 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆59Updated 2 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 10 months ago
• jsxlei / scCLIP
  ☆28Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆51Updated last month
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆27Updated 8 months ago
• microsoft / zero-shot-scfoundation
  ☆61Updated 8 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆120Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆22Updated 3 weeks ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆58Updated 3 months ago
• yhr91 / GEARS_misc
  ☆20Updated 6 months ago
• jkobject / geneformer
  ☆60Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆42Updated 7 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆26Updated last year
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 4 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆139Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 11 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆32Updated this week
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 6 months ago
• bowang-lab / scGPT-spatial
  ☆88Updated 2 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆76Updated 9 months ago
• Genentech / PerturbQA
  ☆13Updated last month
• QuKunLab / MultiomeBenchmarking
  ☆43Updated last month
• theislab / scTab
  ☆58Updated 7 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 9 months ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated last month
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆14Updated last month
• HelloWorldLTY / scELMo
  Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
  ☆13Updated 4 months ago