OmicsML / CellPLM

Related projects ⓘ

Alternatives and complementary repositories for CellPLM

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆64Updated 6 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆51Updated 2 months ago
• jsxlei / scCLIP
  ☆26Updated 9 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆166Updated this week
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 2 months ago
• jkobject / geneformer
  ☆37Updated 11 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆38Updated 2 months ago
• microsoft / zero-shot-scfoundation
  ☆51Updated 2 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆22Updated 3 months ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆48Updated 2 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆31Updated last month
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆131Updated 8 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆22Updated 9 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆30Updated 2 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆43Updated 2 weeks ago
• TencentAILabHealthcare / scPROTEIN
  ☆46Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆109Updated 2 months ago
• snap-stanford / SATURN
  ☆108Updated 4 months ago
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆16Updated last year
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆24Updated this week
• yhr91 / GEARS_misc
  ☆15Updated last month
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆67Updated last year
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆104Updated 3 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆210Updated 3 months ago
• kodaim1115 / scMM
  ☆16Updated 3 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆53Updated 5 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆118Updated 3 weeks ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆50Updated 5 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆55Updated last year