Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
☆102Mar 28, 2024Updated 2 years ago
Alternatives and similar repositories for CellPLM
Users that are interested in CellPLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- Single-Cell Multimodal Prediction via Transformer☆27Feb 7, 2024Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆161Nov 23, 2025Updated 5 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- ☆437Jan 21, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆1,552Updated this week
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆390Mar 19, 2026Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- ☆406Nov 23, 2025Updated 5 months ago
- ☆87May 13, 2025Updated 11 months ago
- ☆62Jul 23, 2024Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆253Feb 26, 2026Updated 2 months ago
- ☆850Apr 20, 2025Updated last year
- A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution☆43Sep 15, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆356Dec 13, 2023Updated 2 years ago
- Single cell foundation model with federated tabular learning☆29Mar 4, 2025Updated last year
- Single-Cell (Perturbation) Model Library☆100Mar 30, 2026Updated last month
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- ☆341May 23, 2025Updated 11 months ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 9 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆128Updated this week
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆69Dec 29, 2024Updated last year
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- ☆164Jul 3, 2024Updated last year
- ☆28Aug 29, 2025Updated 8 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆31Aug 11, 2025Updated 8 months ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆82Apr 13, 2026Updated 2 weeks ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆84Mar 5, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆78May 24, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆114Mar 27, 2026Updated last month
- ☆67Nov 6, 2024Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆23Jan 31, 2026Updated 3 months ago
- A model developed for the generation of scRNA-seq data☆89Jan 21, 2026Updated 3 months ago
- ☆33Feb 21, 2024Updated 2 years ago