☆17Mar 11, 2024Updated last year
Alternatives and similar repositories for SimBench
Users that are interested in SimBench are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆27Nov 2, 2024Updated last year
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago
- Definition of link data for TogoID☆14Updated this week
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 3 weeks ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 5 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- A single cell sequencing read simulator.☆34Oct 14, 2024Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- CANOPUS visualization for Jupyter notebook☆20Mar 9, 2022Updated 3 years ago
- A statistical simulator for rational scRNA-seq experimental design☆12Dec 14, 2020Updated 5 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- reverse gene expression score☆15Sep 8, 2023Updated 2 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- Source code for "Improving Attention Mechanism in Graph Neural Networks via Cardinality Preservation" (IJCAI 2020)☆17Jul 25, 2024Updated last year
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆17Jan 5, 2021Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- 🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.☆18Apr 11, 2024Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- R package to estimate repeatabilities (intra-class coefficients) for Gaussian and non-Gaussian data.☆19Apr 29, 2025Updated 10 months ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- A deep generative neural network based approach to impute drug response☆21May 30, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Jun 28, 2024Updated last year
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆24Feb 3, 2021Updated 5 years ago