Alternatives and similar repositories for SimBench

Users that are interested in SimBench are comparing it to the libraries listed below

• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated last week
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 3 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆14Updated 3 years ago
• jishnu-lab / SLIDE
  ☆29Updated 4 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated 3 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated last week
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆62Updated 5 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆15Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆34Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago
• Vivianstats / scDesign
  A statistical simulator for rational scRNA-seq experimental design
  ☆12Updated 4 years ago
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆25Updated 11 months ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆24Updated 9 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 6 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆25Updated 6 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆28Updated last year
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆37Updated 3 years ago