☆20Jul 28, 2026Updated 3 months ago
Alternatives and similar repositories for SimBench
Users that are interested in SimBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication☆11Jun 13, 2022Updated 4 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- countsimQC - Compare characteristic features of count data sets☆31Apr 28, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A single cell sequencing read simulator.☆35Oct 14, 2024Updated 2 years ago
- ☆10Oct 31, 2021Updated 4 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆19Feb 10, 2023Updated 3 years ago
- ☆23Sep 8, 2023Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 3 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 8 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated 2 years ago
- Definition of link data for TogoID☆15Oct 23, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Sep 1, 2023Updated 3 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆12Nov 10, 2023Updated 2 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- ☆10Aug 5, 2021Updated 5 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆128Sep 29, 2025Updated last year
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆71Jun 29, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆19Jan 5, 2021Updated 5 years ago
- ☆10May 31, 2022Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- reverse gene expression score☆17Sep 8, 2023Updated 3 years ago
- ☆23Aug 28, 2022Updated 4 years ago
- The web application for the crowdsourced gene expression signatures: http://amp.pharm.mssm.edu/creeds/☆11Jul 6, 2023Updated 3 years ago
- ☆10Jul 19, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Single cell isoform heterogeneity and differential alternative splicing analysis