Alternatives and similar repositories for Single-cell-drug-repositioning

Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below

• sdentro / copykat_pipeline
  ☆12Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated last year
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• xushiabbvie / TDtool
  ☆10Updated 8 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆28Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 8 months ago
• qingnanl / gsdensity
  ☆9Updated 11 months ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆18Updated 9 months ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆12Updated 9 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆19Updated this week
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 7 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• kris-nader / scTherapy
  Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…
  ☆11Updated 4 months ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆21Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆22Updated last month