Alternatives and similar repositories for Single-cell-drug-repositioning

Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below

• sdentro / copykat_pipeline
  ☆12Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 6 years ago
• kris-nader / scTherapy
  Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…
  ☆11Updated 3 months ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆20Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆21Updated 3 weeks ago
• swaruplabUCI / DSAD_Spatial_Miyoshi_Morabito_2024
  Code associated with the data analysis for Miyoshi & Morabito 2024
  ☆17Updated 6 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆13Updated 7 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆15Updated last week
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 8 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 4 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆27Updated last year
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆12Updated 8 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 6 months ago
• ding-lab / PanCan_snATAC_publication
  ☆17Updated 10 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• xushiabbvie / TDtool
  ☆10Updated 7 months ago