Alternatives and similar repositories for Single-cell-drug-repositioning

Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below

• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆88Updated 9 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆13Updated 2 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆28Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated last year
• ding-lab / PanCan_snATAC_publication
  ☆19Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆18Updated last week
• datapplab / AutoClass
  ☆44Updated 3 years ago
• JDBLab / Pancreas_ductal_scRNAseq
  The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…
  ☆16Updated 3 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago
• CSB5 / CaDRReS-Sc
  CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
  ☆17Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 3 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated 2 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 9 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆43Updated last month
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆22Updated last year
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆27Updated 5 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago