lanagarmire / Single-cell-drug-repositioning
☆15Updated 6 months ago
Alternatives and similar repositories for Single-cell-drug-repositioning:
Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below
- ☆11Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- Gene group activity utility functions for Scanpy☆65Updated 3 weeks ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 3 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated last month
- ☆54Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Materials and scripts for building cell type encyclopedia table☆18Updated last week
- ☆21Updated 3 months ago
- ☆10Updated last year
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 4 years ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆24Updated 2 weeks ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- BioTIP: Biological Tipping-Point Identification and Characterization☆18Updated 3 weeks ago
- ☆19Updated 8 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- ☆16Updated 5 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆31Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Multiple trajectory alignment of time-series data☆10Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- ☆12Updated 4 years ago
- ☆23Updated 2 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago