lanagarmire / Single-cell-drug-repositioningLinks
☆16Updated last year
Alternatives and similar repositories for Single-cell-drug-repositioning
Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- ☆18Updated 4 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- ☆13Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- cTPnet Package☆26Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆44Updated last year
- ☆30Updated 3 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆18Updated last month
- ☆11Updated 2 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 2 weeks ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 3 weeks ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 5 months ago
- ACTIONet single-cell analysis framework☆43Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated last month
- ☆10Updated last week
- ☆15Updated 2 years ago
- R package IReNA☆28Updated 11 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Updated 10 months ago