Alternatives and similar repositories for Single-cell-drug-repositioning

Users that are interested in Single-cell-drug-repositioning are comparing it to the libraries listed below

• gabrielakinker / CCLE_heterogeneity
  ☆62Updated last year
• sdentro / copykat_pipeline
  ☆13Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 3 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆43Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 9 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 3 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated 2 years ago
• ding-lab / PanCan_snATAC_publication
  ☆19Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆29Updated 3 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆21Updated 2 months ago
• jcolinge / BulkSignalR
  BulkSignalR
  ☆24Updated 4 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated 11 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆25Updated 3 years ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• soumelis-lab / ICELLNET
  ☆21Updated 5 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated last year
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆42Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 8 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• xushiabbvie / TDtool
  ☆13Updated last year