OmicsML / danceLinks
DANCE: a deep learning library and benchmark platform for single-cell analysis
☆377Updated 2 weeks ago
Alternatives and similar repositories for dance
Users that are interested in dance are comparing it to the libraries listed below
Sorting:
- ☆332Updated last week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆293Updated 8 months ago
- ☆328Updated 4 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆428Updated last month
- ☆30Updated last year
- ☆324Updated last year
- ☆808Updated 5 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆97Updated last year
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year
- Single-Cell (Perturbation) Model Library☆73Updated last month
- ☆288Updated last year
- ☆356Updated 8 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆219Updated 7 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆62Updated 9 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 6 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆151Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆146Updated 11 months ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆194Updated 3 months ago
- ☆22Updated 11 months ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆125Updated 3 years ago
- ☆134Updated last year
- Benchmarking analysis of data integration tools☆383Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆163Updated 3 years ago
- ☆23Updated last week
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆239Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆145Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆83Updated last week
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆169Updated 4 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 7 months ago