A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution
☆44Sep 15, 2024Updated 2 years ago
Alternatives and similar repositories for SpatialCTD
Users that are interested in SpatialCTD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆389Oct 19, 2026Updated last week
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆29Feb 7, 2024Updated 2 years ago
- ☆22Apr 27, 2023Updated 3 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆108Mar 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆867Apr 20, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 11 months ago
- ☆13Aug 9, 2022Updated 4 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- ☆13Jul 16, 2026Updated 3 months ago
- Spatial One☆32Oct 31, 2024Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆24Jan 10, 2025Updated last year
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆33Sep 30, 2025Updated last year
- ☆15Jun 27, 2025Updated last year
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- ☆12Oct 13, 2023Updated 3 years ago
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated last week
- Rethinking Medical Report Generation: Disease Revealing Enhancement with Knowledge Graph☆26Oct 27, 2023Updated 3 years ago
- XPS15-9560-Catalina, Q群：161385229☆10Nov 18, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- ☆17Aug 11, 2021Updated 5 years ago
- ☆18Apr 6, 2023Updated 3 years ago
- ☆29Oct 1, 2026Updated 3 weeks ago
- ☆12Dec 4, 2023Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- ☆20Jun 26, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- ☆10Dec 20, 2024Updated last year
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆54Updated this week
- ☆13Sep 30, 2024Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 6 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Oct 19, 2026Updated last week
- An R package for performing cell typing in SMI and other single cell data☆56May 1, 2026Updated 5 months ago