Alternatives and similar repositories for scBERT

Users that are interested in scBERT are comparing it to the libraries listed below

• biomap-research / scFoundation
  ☆372Updated last week
• theislab / single-cell-transformer-papers
  ☆336Updated 6 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆315Updated 10 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆364Updated last week
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆63Updated 11 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆438Updated 3 weeks ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆228Updated 9 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆127Updated last week
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆99Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆99Updated last year
• jkobject / geneformer
  ☆85Updated 3 months ago
• yiqunchen / GenePT
  ☆297Updated last year
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆133Updated 3 weeks ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆84Updated 3 months ago
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆125Updated 3 years ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆79Updated 9 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆68Updated 11 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆154Updated 9 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆227Updated 5 months ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆163Updated 4 years ago
• ml4bio / CLEAR
  CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
  ☆35Updated 3 years ago
• snap-stanford / SATURN
  ☆145Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆168Updated 3 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆131Updated 9 months ago
• yhr91 / GEARS_misc
  ☆24Updated last year
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆246Updated 2 years ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆395Updated 2 months ago
• jsxlei / scCLIP
  ☆30Updated last year