Alternatives and similar repositories for scBERT:

Users that are interested in scBERT are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆306Updated last month
• biomap-research / scFoundation
  ☆319Updated 2 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆258Updated 2 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆249Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆138Updated last year
• yiqunchen / GenePT
  ☆255Updated last year
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆115Updated 3 years ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆407Updated 2 weeks ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆188Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆55Updated 3 months ago
• jkobject / geneformer
  ☆60Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆183Updated last month
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆340Updated 3 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆74Updated 8 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆89Updated 3 weeks ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆352Updated 3 weeks ago
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆287Updated 10 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆50Updated 3 weeks ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆153Updated 2 years ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆346Updated 3 months ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆359Updated last month
• Winnie09 / GPTCelltype
  ☆190Updated 11 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆68Updated 3 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆80Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆119Updated last month
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆58Updated last month
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆41Updated 7 months ago
• snap-stanford / SATURN
  ☆120Updated 9 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆118Updated 2 years ago