☆360Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for scBERT
Users that are interested in scBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆423Nov 23, 2025Updated 8 months ago
- ☆1,615Apr 29, 2026Updated 3 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆141Mar 18, 2022Updated 4 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GeneCompass☆120Feb 10, 2026Updated 6 months ago
- ☆98Aug 24, 2025Updated 11 months ago
- ☆861Apr 20, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,675Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆324Jul 8, 2026Updated last month
- Reusability report of scBERT☆14Jul 14, 2024Updated 2 years ago
- ☆118Aug 18, 2025Updated 11 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆391Feb 1, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- ☆341May 23, 2025Updated last year
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆389Updated this week
- Models and datasets for perturbational single-cell omics☆180Aug 19, 2022Updated 3 years ago
- ☆18Apr 6, 2023Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆475Feb 9, 2026Updated 6 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆104Mar 28, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆170Jul 3, 2024Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 4 months ago
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- ☆529Jul 15, 2026Updated 3 weeks ago
- Single cell perturbation prediction☆351Dec 5, 2024Updated last year
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆635Jul 24, 2026Updated 3 weeks ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆215Jul 11, 2026Updated last month
- ☆85Jan 9, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the alpha version of the CellOracle package☆481Apr 30, 2026Updated 3 months ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Jul 25, 2024Updated 2 years ago
- ☆310Nov 10, 2024Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆195Mar 27, 2025Updated last year
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago