Alternatives and similar repositories for scBERT

Users that are interested in scBERT are comparing it to the libraries listed below

• biomap-research / scFoundation
  ☆360Updated 8 months ago
• theislab / single-cell-transformer-papers
  ☆331Updated 5 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆300Updated 8 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆336Updated last week
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆222Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 9 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆430Updated last month
• jkobject / geneformer
  ☆81Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• yiqunchen / GenePT
  ☆292Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆98Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆92Updated last week
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆117Updated last week
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆75Updated last month
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆220Updated 4 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆125Updated 3 years ago
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆331Updated 3 months ago
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆383Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 8 months ago
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆813Updated 6 months ago
• snap-stanford / SATURN
  ☆141Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆165Updated 3 years ago
• yhr91 / GEARS_misc
  ☆22Updated last year
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆161Updated 3 years ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆388Updated 9 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆388Updated last month
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆432Updated this week