☆364Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for scBERT
Users that are interested in scBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆431Nov 23, 2025Updated 10 months ago
- ☆1,636Apr 29, 2026Updated 4 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆50Aug 25, 2024Updated 2 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆140Mar 18, 2022Updated 4 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆154Mar 4, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GeneCompass☆122Sep 4, 2026Updated 2 weeks ago
- ☆99Aug 24, 2025Updated last year
- ☆863Apr 20, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,695Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆342Jul 8, 2026Updated 2 months ago
- Reusability report of scBERT☆14Jul 14, 2024Updated 2 years ago
- ☆123Aug 18, 2025Updated last year
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆71Dec 29, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆410Feb 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- ☆343Aug 16, 2026Updated last month
- Models and datasets for perturbational single-cell omics☆184Aug 19, 2022Updated 4 years ago
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆387Sep 12, 2026Updated last week
- ☆18Apr 6, 2023Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆479Feb 9, 2026Updated 7 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆106Mar 28, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆173Jul 3, 2024Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆260Mar 14, 2026Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆96Jan 21, 2026Updated 8 months ago
- ☆581Aug 30, 2026Updated 3 weeks ago
- Single cell perturbation prediction☆356Dec 5, 2024Updated last year
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆700Jul 24, 2026Updated 2 months ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆217Jul 11, 2026Updated 2 months ago
- ☆85Jan 9, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Jul 25, 2024Updated 2 years ago
- ☆314Nov 10, 2024Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago