Identifying cell subpopulational differences among single-cell biospecimens
☆17Sep 27, 2024Updated last year
Alternatives and similar repositories for phemd
Users that are interested in phemd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 8 months ago
- 单细胞测序的高级教程☆12Apr 12, 2021Updated 5 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18Jul 14, 2026Updated last week
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- ☆18Dec 4, 2025Updated 7 months ago
- TF Binding and Expression Target Analysis 2☆21Nov 19, 2025Updated 8 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Jun 26, 2026Updated 3 weeks ago
- ☆48Apr 18, 2020Updated 6 years ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 3 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated last year
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆18Jun 23, 2026Updated 3 weeks ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Feb 17, 2021Updated 5 years ago
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆24Apr 27, 2026Updated 2 months ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 8 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Gene Set Enrichment Analysis Made Awesome☆12May 11, 2018Updated 8 years ago
- ☆11Apr 26, 2021Updated 5 years ago
- BIH Cluster Wiki☆19Jun 22, 2026Updated 3 weeks ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Paired-seq☆15Jul 17, 2024Updated 2 years ago
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 4 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 13, 2026Updated 3 months ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago