Single-Cell Multimodal Prediction via Transformer
☆28Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for scMoFormer
Users that are interested in scMoFormer are comparing it to the libraries listed below
Sorting:
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Aug 13, 2024Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Mar 28, 2024Updated last year
- A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution☆43Sep 15, 2024Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆384Mar 2, 2026Updated 2 weeks ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆29Aug 11, 2025Updated 7 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- ☆842Apr 20, 2025Updated 11 months ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated last year
- ☆19Dec 1, 2021Updated 4 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated this week
- Single-cell biological network inference using a heterogeneous graph transformer☆76Feb 24, 2025Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 9 months ago
- A model developed for the generation of scRNA-seq data☆87Jan 21, 2026Updated 2 months ago
- ☆413Jan 21, 2026Updated 2 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- an unbias-learning-to-rank dataset of Baidu☆66Aug 3, 2024Updated last year
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆29Jul 20, 2020Updated 5 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆34Jul 10, 2024Updated last year
- ☆17May 23, 2025Updated 9 months ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 8 months ago
- Deep Clustering Learning☆12Aug 8, 2019Updated 6 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- ☆29Dec 15, 2021Updated 4 years ago
- ☆15Oct 4, 2024Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆20Jan 31, 2026Updated last month
- A tutorial on learned non-adversarial invariance in neural networks☆14Dec 8, 2019Updated 6 years ago
- ☆12Nov 19, 2023Updated 2 years ago
- ☆52Mar 31, 2024Updated last year
- ☆338May 23, 2025Updated 9 months ago
- Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data☆13Apr 22, 2021Updated 4 years ago
- [NeurIPS'23] Source code of "Data-Centric Learning from Unlabeled Graphs with Diffusion Model": A data-centric transfer learning framewor…☆22Jun 4, 2025Updated 9 months ago
- Code for NeurIPS 2020 paper: "Estimating the Effects of Continuous-valued Interventions using Generative Adversarial Networks" by I. Bica…☆30Jan 8, 2021Updated 5 years ago
- Multidigraph learning (MDGL) for training recurrent spiking neural networks☆14Dec 18, 2021Updated 4 years ago
- Creating the DeepSeek V3 model from scratch☆26Mar 28, 2025Updated 11 months ago
- ☆81Apr 26, 2022Updated 3 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- ☆39Jun 9, 2025Updated 9 months ago