Alternatives and similar repositories for MuSe-GNN:

Users that are interested in MuSe-GNN are comparing it to the libraries listed below

• jsxlei / scCLIP
  ☆27Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆78Updated last year
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆27Updated 7 months ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• jimmylihui / GenBench
  ☆21Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆53Updated 3 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆64Updated 2 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆26Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆86Updated last week
• microsoft / zero-shot-scfoundation
  ☆58Updated 7 months ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 6 months ago
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆45Updated 3 months ago
• liugangcode / InfoAlign
  The code for "Learning Molecular Representation in a Cell"
  ☆24Updated 3 weeks ago
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆30Updated last year
• deeplearningplus / tGPT
  Generative Pretraining from Transcriptomes
  ☆12Updated 2 years ago
• Boom5426 / Awesome-Phenotypic-Drug-Discovery
  PDD: Awesome Phenotypic Drug Discovery
  ☆22Updated this week
• zhoujieli / Awesome-LLM-Agents-Scientific-Discovery
  A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…
  ☆16Updated 3 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆45Updated 2 weeks ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated 6 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆55Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆22Updated last week
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 3 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆83Updated last month
• Philyzh8 / scTAG
  "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
  ☆21Updated 2 years ago
• myzhengSIMM / TranSiGen
  ☆27Updated 2 months ago
• TencentAILabHealthcare / DNAGPT
  ☆39Updated last year
• qiaoqiaoLF / MxDNA
  [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
  ☆13Updated 3 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆40Updated 7 months ago
• Lupin1998 / VQDNA
  [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
  ☆11Updated 6 months ago
• OmicsML / awesome-agents-biology-papers
  ☆17Updated 6 months ago