Alternatives and similar repositories for MuSe-GNN

Users that are interested in MuSe-GNN are comparing it to the libraries listed below

• jsxlei / scCLIP
  ☆32Updated last year
• Genentech / PerturbQA
  ☆35Updated 2 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆34Updated 2 years ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆63Updated 11 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• RyanWangZf / BioBridge
  ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
  ☆76Updated last year
• SichenZhu / Stem
  [ICLR 2025] Stem: Gene Expression Inference from Histology Images
  ☆40Updated 8 months ago
• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆35Updated last year
• microsoft / zero-shot-scfoundation
  ☆76Updated last year
• jimmylihui / GenBench
  ☆23Updated 6 months ago
• addiewc / Sagittarius
  Gene expression time-series extrapolation for heterogeneous data
  ☆19Updated 2 years ago
• Boom5426 / Awesome-Phenotypic-Drug-Discovery
  PDD: Awesome Phenotypic Drug Discovery
  ☆36Updated 2 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆32Updated last year
• gersteinlab / CellForge
  ☆122Updated last month
• Violet24K / Awesome-Flow-Matching-Meets-Biology
  A curated list of resources for "Flow Matching Meets Biology and Life Science: A Survey"
  ☆56Updated 3 months ago
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆383Updated 3 weeks ago
• ncbi-nlp / cell-o1
  Code and data for Cell-o1.
  ☆26Updated 3 months ago
• carpenter-singh-lab / 2024_Arevalo_NeurIPS_MotiVE
  ☆20Updated 4 months ago
• HanwenXuTHU / BioTranslatorProject
  ☆35Updated 2 years ago
• Philyzh8 / scTAG
  "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
  ☆25Updated 2 years ago
• snap-stanford / BioDiscoveryAgent
  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
  ☆92Updated 5 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆133Updated 3 weeks ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆34Updated last year
• yhr91 / GEARS_misc
  ☆25Updated last year
• zjlrock777 / Awesome-LLM-Agents-Scientific-Discovery
  A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…
  ☆69Updated 2 months ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆56Updated last year
• TsinghuaC3I / LLM4BioHypoGen
  [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation
  ☆14Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆80Updated 9 months ago
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆16Updated last year