Alternatives and similar repositories for DeepVelo

Users that are interested in DeepVelo are comparing it to the libraries listed below

• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated 4 months ago
• wangshenguiuc / OnClass
  Single cell typing based on cell ontology
  ☆52Updated last year
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆112Updated last year
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated last month
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 6 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 3 years ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• EngreitzLab / gene_network_evaluation
  Evaluation framework for computationally inferred gene networks from single-cell data.
  ☆13Updated last week
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆58Updated 5 years ago
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated 2 years ago
• YosefLab / velovi
  ☆40Updated last week
• suinleelab / contrastiveVI
  ☆57Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 3 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated last month
• xinglab-ai / genomap
  Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
  ☆19Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• Genentech / PerturbQA
  ☆22Updated 6 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆109Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 10 months ago
• vandijklab / CINEMA-OT
  ☆33Updated 4 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated last month
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• cantinilab / scPRINT
  single cell foundation model
  ☆100Updated last week
• aristoteleo / tabula
  federated learning with tabular learning
  ☆21Updated 6 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago