Alternatives and similar repositories for sVAE

Users that are interested in sVAE are comparing it to the libraries listed below

• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 4 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆109Updated last year
• nitzanlab / biolord
  ☆82Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆85Updated this week
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆163Updated 3 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆50Updated 2 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆75Updated last year
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆144Updated 10 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 11 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• vandijklab / CINEMA-OT
  ☆33Updated 5 months ago
• theislab / prophet
  ☆36Updated this week
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated last week
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆78Updated last week
• altoslabs / perturbench
  ☆38Updated 3 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated last month
• zsteve / gWOT
  Global Waddington-OT
  ☆24Updated 5 months ago
• HantaoShu / DeepSEM
  ☆84Updated 2 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆76Updated 8 months ago
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆23Updated 2 months ago
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆31Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆75Updated last year