Genentech / sVAELinks
☆63Updated last year
Alternatives and similar repositories for sVAE
Users that are interested in sVAE are comparing it to the libraries listed below
Sorting:
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated last year
- Functional and Learnable Cell dynamicS☆17Updated 3 weeks ago
- Git Repo for simulating Boolean Models☆34Updated 11 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆100Updated 9 months ago
- ☆23Updated 3 weeks ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- ☆26Updated last week
- Diffusion model for gene regulatory network inference.☆18Updated 2 months ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- ☆79Updated 9 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Distributed single-cell data analysis.☆31Updated 3 weeks ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- ☆32Updated 3 weeks ago
- Simple scVI implementation☆11Updated last week
- Simulating single-cell data using gene regulatory networks 📠☆73Updated last year
- ☆55Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- single cell foundation model for Gene network inference and more☆16Updated 8 months ago
- Modeling complex perturbations with CellFlow☆44Updated last week
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆137Updated 7 months ago
- ☆100Updated 2 years ago
- Global Waddington-OT☆23Updated 2 months ago
- ☆10Updated last year
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆19Updated 3 months ago
- ☆45Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month