Genentech / sVAE
☆61Updated last year
Alternatives and similar repositories for sVAE:
Users that are interested in sVAE are comparing it to the libraries listed below
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated 11 months ago
- Diffusion model for gene regulatory network inference.☆18Updated last month
- ☆78Updated 8 months ago
- Functional and Learnable Cell dynamicS☆15Updated 2 months ago
- Git Repo for simulating Boolean Models☆34Updated 10 months ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- ☆30Updated this week
- ☆25Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆99Updated 8 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆131Updated 6 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆100Updated 2 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆23Updated last month
- Distributed single-cell data analysis.☆31Updated this week
- ☆21Updated this week
- Simulating single-cell data using gene regulatory networks 📠☆73Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆58Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆124Updated 2 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last week
- single cell foundation model for Gene network inference and more☆16Updated 7 months ago
- ☆31Updated 2 weeks ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆112Updated 3 months ago
- ☆10Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 3 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆61Updated 2 years ago
- ☆58Updated 7 months ago
- ☆40Updated 6 months ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆17Updated 2 months ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year