sidhomj / DeepTCR_Cancer
Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy
☆15Updated 2 years ago
Alternatives and similar repositories for DeepTCR_Cancer:
Users that are interested in DeepTCR_Cancer are comparing it to the libraries listed below
- single cell analysis of treatment naive and treated human PDAC☆21Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆22Updated 3 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 2 months ago
- Materials and scripts for building cell type encyclopedia table☆18Updated last month
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- ☆41Updated last year
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Gene group activity utility functions for Scanpy☆67Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆10Updated last year
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- ☆51Updated 10 months ago
- ☆15Updated 7 months ago
- cTPnet Package☆24Updated 2 years ago
- ☆28Updated 4 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- ☆20Updated 2 years ago
- ☆15Updated 7 months ago
- ☆23Updated last month
- Reproducing result from the paper☆33Updated 3 years ago
- ☆56Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- ☆17Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 3 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- inferring regulatory cellular dynamics☆33Updated 3 weeks ago