Alternatives and similar repositories for Awesome-Bio-Foundation-Models:

Users that are interested in Awesome-Bio-Foundation-Models are comparing it to the libraries listed below

• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆243Updated 2 months ago
• TencentAILabHealthcare / DNAGPT
  ☆36Updated last year
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆120Updated 8 months ago
• yiqunchen / GenePT
  ☆241Updated 11 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆166Updated 11 months ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆28Updated 6 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆83Updated 3 months ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆35Updated 9 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆51Updated last month
• biomap-research / scFoundation
  ☆296Updated 2 weeks ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆226Updated last month
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆106Updated 2 weeks ago
• jkobject / geneformer
  ☆51Updated last year
• microsoft / zero-shot-scfoundation
  ☆56Updated 5 months ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆30Updated last week
• jimmylihui / GenBench
  ☆20Updated this week
• theislab / single-cell-transformer-papers
  ☆294Updated last week
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆272Updated 3 months ago
• genbio-ai / AIDO
  AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…
  ☆55Updated last month
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆79Updated this week
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 5 months ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆104Updated 3 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆226Updated 2 weeks ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆70Updated 7 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆245Updated this week
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆219Updated last month
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆334Updated 2 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆157Updated last week
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 10 months ago