apeterswu / Awesome-Bio-Foundation-Models
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
☆108Updated this week
Related projects: ⓘ
- Repository for mRNA Paper and CodonBERT publication.☆103Updated 3 months ago
- RNA foundation model☆189Updated 5 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆82Updated 2 weeks ago
- ☆230Updated last month
- ☆129Updated last month
- ☆76Updated this week
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆140Updated 2 weeks ago
- ☆30Updated last year
- RiboNucleic Acid (RNA) Language Model☆56Updated 4 months ago
- ☆71Updated last year
- Primary RNA sequence model☆25Updated 4 months ago
- ☆166Updated 6 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆54Updated last year
- ☆69Updated last year
- [ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet☆318Updated this week
- Official repository for the ProteinGym benchmarks☆210Updated last week
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆27Updated 2 months ago
- Generative Language Modeling for Antibody Design☆116Updated 11 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆42Updated 7 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆61Updated 5 months ago
- The LucaOne’s code, including model code and pre-training code.☆123Updated 2 weeks ago
- Protein structure datasets for machine learning.☆94Updated 2 months ago
- This repo is for the Open Protein Instructions (OPI) project, aiming to build and release a high-quality and comprehensive protein instru…☆15Updated last week
- Multi-task and masked language model-based protein sequence embedding models.☆95Updated 3 years ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆36Updated 3 months ago
- predicting peptide-protein interactions☆117Updated 8 months ago
- The first large protein language model trained follows structure instructions.☆65Updated 3 months ago
- Contextualizing protein representations using deep learning on protein networks and single-cell data☆67Updated last week
- AbLang: A language model for antibodies☆118Updated 11 months ago
- Scientific Large Language Models: A Survey on Biological & Chemical Domains☆211Updated last month