PharMolix / LangCell
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
☆58Updated 4 months ago
Alternatives and similar repositories for LangCell
Users that are interested in LangCell are comparing it to the libraries listed below
Sorting:
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆57Updated 11 months ago
- ☆65Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆84Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆69Updated 4 months ago
- Single-Cell (Perturbation) Model Library☆59Updated last month
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆92Updated last month
- GeneCompass☆77Updated 9 months ago
- ☆20Updated 7 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆140Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆43Updated 8 months ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆36Updated this week
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆47Updated 5 months ago
- ☆28Updated last year
- A model developed for the generation of scRNA-seq data☆60Updated 2 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆53Updated 9 months ago
- ☆62Updated 8 months ago
- ☆10Updated last year
- ☆277Updated 3 weeks ago
- ☆96Updated last month
- ☆124Updated 10 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆125Updated 2 months ago
- ☆21Updated 2 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆254Updated 3 months ago
- ☆310Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆68Updated 2 months ago
- ☆50Updated 5 months ago
- Single-cell spatial elucidation through image-augmented graph transformer☆32Updated last year
- Contextual AI models for single-cell protein biology☆86Updated 3 months ago
- ☆79Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆64Updated 11 months ago