PharMolix / LangCellLinks
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
☆59Updated 5 months ago
Alternatives and similar repositories for LangCell
Users that are interested in LangCell are comparing it to the libraries listed below
Sorting:
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆85Updated last year
- ☆68Updated last week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆93Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆63Updated 2 weeks ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆70Updated 4 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆58Updated last year
- GeneCompass☆79Updated 2 weeks ago
- ☆20Updated 7 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆141Updated last year
- A model developed for the generation of scRNA-seq data☆64Updated 3 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆43Updated 9 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆53Updated 5 months ago
- ☆106Updated 2 months ago
- ☆28Updated last year
- ☆49Updated 6 months ago
- ☆39Updated last year
- ☆64Updated 9 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- Single-cell spatial elucidation through image-augmented graph transformer☆32Updated last year
- ☆16Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆258Updated 4 months ago
- ☆21Updated 3 months ago
- Contextual AI models for single-cell protein biology☆87Updated 3 months ago
- ☆286Updated last month
- ☆315Updated last week
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- ☆30Updated 4 months ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆42Updated this week
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 3 months ago
- ☆126Updated 11 months ago