Alternatives and similar repositories for LangCell

Users that are interested in LangCell are comparing it to the libraries listed below

• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• jkobject / geneformer
  ☆77Updated 3 weeks ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆93Updated this week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆69Updated 2 weeks ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• yhr91 / GEARS_misc
  ☆20Updated 11 months ago
• biomap-research / scFoundation
  ☆355Updated 7 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆330Updated 3 weeks ago
• TencentAILabHealthcare / scBERT
  ☆322Updated last year
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆60Updated 9 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆291Updated 7 months ago
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆66Updated last week
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆218Updated 6 months ago
• jsxlei / scCLIP
  ☆30Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆71Updated 6 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• Genentech / SpatialAgent
  ☆125Updated 5 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆378Updated this week
• theislab / single-cell-transformer-papers
  ☆325Updated 3 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆53Updated 9 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• yiqunchen / GenePT
  ☆282Updated last year
• TencentAILabHealthcare / DNAGPT
  ☆43Updated 2 years ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆20Updated 6 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆73Updated 6 months ago
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆195Updated 2 months ago