Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
☆68Dec 29, 2024Updated last year
Alternatives and similar repositories for LangCell
Users that are interested in LangCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 9 months ago
- ☆426Jan 21, 2026Updated 2 months ago
- ☆353Dec 13, 2023Updated 2 years ago
- ☆405Nov 23, 2025Updated 4 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Jun 5, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆105Aug 18, 2025Updated 7 months ago
- ☆340May 23, 2025Updated 10 months ago
- ☆22Dec 3, 2024Updated last year
- GeneCompass☆114Feb 10, 2026Updated 2 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆102Mar 28, 2024Updated 2 years ago
- ☆101Aug 26, 2025Updated 7 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆19May 29, 2025Updated 10 months ago
- ☆1,537Nov 12, 2025Updated 5 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆112Mar 27, 2026Updated 2 weeks ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated last year
- pytorch dataloaders for single-cell perturbation data☆44Mar 8, 2026Updated last month
- Toolkit for single-cell copy number analysis☆32Dec 15, 2025Updated 4 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆159Nov 23, 2025Updated 4 months ago
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆15Jul 15, 2024Updated last year
- ☆30Jan 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Feb 20, 2025Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆47Aug 25, 2024Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 10 months ago
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆12Jan 19, 2026Updated 2 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆354Feb 1, 2025Updated last year
- A foundation model for single-cell epigenomic data☆62Jan 6, 2026Updated 3 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- ☆92Aug 24, 2025Updated 7 months ago
- ☆65Sep 13, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🏃 The go-to single-cell Foundation Model☆142Feb 20, 2026Updated last month
- ☆164Jul 3, 2024Updated last year
- A statistical simulator for rational scRNA-seq experimental design☆12Dec 14, 2020Updated 5 years ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆31Feb 5, 2026Updated 2 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆102Jul 6, 2025Updated 9 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆14Jul 16, 2024Updated last year