Paper collection for single cell foundation models
☆41Mar 17, 2024Updated 2 years ago
Alternatives and similar repositories for awesome-single-cell-foundation
Users that are interested in awesome-single-cell-foundation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆56Aug 2, 2025Updated last year
- ☆343Aug 16, 2026Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆34Jun 28, 2026Updated 3 months ago
- Long Long Term Memory Neural Net Cells☆10Jan 25, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆26Mar 12, 2025Updated last year
- Deep Large-Scale Inference UsingKnockoffs☆11Nov 4, 2021Updated 4 years ago
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆321May 28, 2025Updated last year
- ☆16Sep 1, 2023Updated 3 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 2 months ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆39Aug 16, 2023Updated 3 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆24Dec 24, 2021Updated 4 years ago
- A fine-mapping method integrating GWAS summary statistics and functional annotation data☆11Dec 28, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CellPolaris☆14Jan 11, 2026Updated 8 months ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 6 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Sep 3, 2026Updated 3 weeks ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- ☆10May 20, 2026Updated 4 months ago
- download and prepare a pdb file for docking wth Vina-flavoured algorithms☆13Oct 11, 2021Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆46May 25, 2024Updated 2 years ago
- ☆13Jun 4, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pytorch Implmentation of Meta Attack via Contrastive Surrogate Objective☆12May 21, 2024Updated 2 years ago
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆14Aug 7, 2020Updated 6 years ago
- ☆15Jul 24, 2024Updated 2 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- Official implementation of paper: MolAE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective (icml 2024)☆12Jul 4, 2024Updated 2 years ago
- ☆865Apr 20, 2025Updated last year
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- The official source code for "Vision Language Model is NOT All You Need: Augmentation Strategies for Molecule Language Model".☆15Jul 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- Documenting a subset of the SMILES language.☆13Jun 23, 2022Updated 4 years ago
- Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."☆22Oct 23, 2025Updated 11 months ago
- Python code for "Fast Bayesian nonnegative matrix factorisation and tri-factorisation", presented at NIPS 2016 Workshop on Advances in Ap…☆21Jun 10, 2018Updated 8 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- The official source code for "Single-cell RNA-seq data imputation using Feature Propagation", accepted at 2023 ICML Workshop on Computati…☆12Aug 31, 2023Updated 3 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago