KatarinaYuan / awesome-single-cell-foundationLinks
Paper collection for single cell foundation models
☆35Updated last year
Alternatives and similar repositories for awesome-single-cell-foundation
Users that are interested in awesome-single-cell-foundation are comparing it to the libraries listed below
Sorting:
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆135Updated 10 months ago
- ☆25Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆113Updated last week
- ☆67Updated 5 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year
- ☆35Updated 3 months ago
- ☆76Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆124Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆58Updated 5 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆33Updated 5 months ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆81Updated 10 months ago
- Contextual AI models for single-cell protein biology☆96Updated 10 months ago
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆126Updated 3 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆100Updated last year
- Modeling complex perturbations with CellFlow☆104Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 9 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- ☆87Updated 2 years ago
- ☆63Updated 2 years ago
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Updated last year
- a unified single-cell data integration framework by optimal transport☆34Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆139Updated last month
- ☆15Updated 5 months ago
- ☆18Updated 4 years ago
- Benchmarking study of machine learning methods for prediction of synthetic lethality☆19Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago