Paper collection for single cell foundation models
☆43Mar 17, 2024Updated 2 years ago
Alternatives and similar repositories for awesome-single-cell-foundation
Users that are interested in awesome-single-cell-foundation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆56Aug 2, 2025Updated last year
- ☆342Aug 16, 2026Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆42Jan 11, 2025Updated last year
- Long Long Term Memory Neural Net Cells☆10Jan 25, 2022Updated 4 years ago
- ☆13Jul 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆26Mar 12, 2025Updated last year
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆322May 28, 2025Updated last year
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- ☆16Sep 1, 2023Updated 3 years ago
- A single-shot☆39Oct 5, 2026Updated last week
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- 92 个数据结构与算法的逐步动画,四语言代码逐行同步高亮 · Step-through animations for 92 data structures & algorithms☆26Oct 8, 2026Updated last week
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆39Aug 16, 2023Updated 3 years ago
- ☆26Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- scPretrain: Multi-task self-supervised learning for cell type classification☆24Dec 24, 2021Updated 4 years ago
- A fine-mapping method integrating GWAS summary statistics and functional annotation data☆11Dec 28, 2023Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆79Mar 7, 2025Updated last year
- ☆592Updated this week
- ☆12Sep 8, 2023Updated 3 years ago
- CellPolaris☆15Jan 11, 2026Updated 9 months ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Oct 8, 2026Updated last week
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- ☆10May 20, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆48May 28, 2026Updated 4 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- ☆13Jun 28, 2024Updated 2 years ago
- ☆16Feb 12, 2026Updated 8 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆48May 25, 2024Updated 2 years ago
- Pytorch Implmentation of Meta Attack via Contrastive Surrogate Objective☆12May 21, 2024Updated 2 years ago
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆14Aug 7, 2020Updated 6 years ago
- ☆13Jun 4, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jul 24, 2024Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 3 years ago
- ☆12Nov 1, 2024Updated last year
- Official implementation of paper: MolAE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective (icml 2024)☆12Jul 4, 2024Updated 2 years ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 7 years ago
- ☆15May 17, 2022Updated 4 years ago