UCSC-VLAA / EpiFoundationLinks
Pytorch implementation of EpiFoundation
☆24Updated 9 months ago
Alternatives and similar repositories for EpiFoundation
Users that are interested in EpiFoundation are comparing it to the libraries listed below
Sorting:
- ☆17Updated 7 months ago
- ☆57Updated last year
- ☆50Updated 8 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆60Updated last year
- Vector representations of gene co-expression in single cell RNAseq.☆36Updated 3 weeks ago
- ☆61Updated last year
- ☆87Updated 3 months ago
- Learning meaningful representations of genes☆19Updated 4 months ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆29Updated 11 months ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Updated 11 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22Updated 6 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- ☆62Updated last month
- ☆58Updated 2 months ago
- ☆11Updated 2 years ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆56Updated last year
- Code space for 'Evaluation of large language models for discovery of gene set function'☆41Updated 11 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 5 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆42Updated 2 weeks ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆38Updated last year
- ☆55Updated 11 months ago
- A foundation model for single-cell epigenomic data☆44Updated last month
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 2 months ago
- ☆15Updated 5 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- ☆87Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆15Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year