Pytorch implementation of EpiFoundation
☆26Feb 25, 2025Updated last year
Alternatives and similar repositories for EpiFoundation
Users that are interested in EpiFoundation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆42May 19, 2026Updated 2 months ago
- A foundation model for single-cell epigenomic data☆71Jun 3, 2026Updated 2 months ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated 2 years ago
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Updated this week
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆51Jun 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Jul 10, 2025Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆110Apr 7, 2026Updated 4 months ago
- ☆60Apr 7, 2026Updated 4 months ago
- ☆35Feb 21, 2024Updated 2 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆35Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆325Jul 8, 2026Updated last month
- A harness for spatial biology☆201May 4, 2026Updated 3 months ago
- Universal Single-Cell Genomics Preprocessing package☆51Jul 29, 2026Updated 2 weeks ago
- ☆23Apr 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Sep 26, 2024Updated last year
- ☆20Jun 12, 2026Updated 2 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆62May 30, 2024Updated 2 years ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆60Jul 22, 2026Updated 3 weeks ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated 2 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆43Jul 20, 2025Updated last year
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated 10 months ago
- ☆69Apr 22, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆111Jul 16, 2026Updated 3 weeks ago
- ☆13Sep 30, 2024Updated last year
- ☆27May 22, 2025Updated last year
- Transformer models for predicting gene regulatory networks from omics data☆21Mar 4, 2026Updated 5 months ago
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆25Updated this week
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 2 months ago
- ☆529Jul 15, 2026Updated last month
- ☆62Apr 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Jan 31, 2023Updated 3 years ago
- ☆23Jan 20, 2021Updated 5 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 4 months ago
- ☆37Jul 27, 2026Updated 2 weeks ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago