Alternatives and similar repositories for EpiFoundation:

Users that are interested in EpiFoundation are comparing it to the libraries listed below

• Teddy-XiongGZ / DeepGSEA
  ☆16Updated 8 months ago
• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆14Updated 2 weeks ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆42Updated 3 weeks ago
• SabbaghCodes / ImbalancedLearningForSingleCellFoundationModels
  Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…
  ☆13Updated 3 months ago
• suinleelab / contrastiveVI
  ☆53Updated 11 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 5 months ago
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆12Updated 9 months ago
• alibaba / damo-creformer
  ☆12Updated last month
• liranmao / Spatial_multi_omics
  ☆10Updated 2 months ago
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆20Updated 3 months ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆16Updated 5 months ago
• sidhomj / DeepTCR_Cancer
  Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy
  ☆16Updated 2 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆20Updated 4 months ago
• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆14Updated last year
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆10Updated last year
• bowang-lab / OCAT
  ☆17Updated 5 months ago
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• arpatil01 / scViewer
  ☆9Updated last year
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆12Updated 3 weeks ago
• visze / sequence_cnn_models
  ☆13Updated 2 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆12Updated 11 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 5 months ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆22Updated last week
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated 2 weeks ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆25Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 10 months ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 8 months ago
• SlavovLab / SCoPE2
  ☆18Updated last year