HelloWorldLTY / scEval
Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
☆51Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for scEval
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆63Updated 6 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆67Updated 7 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- Single-Cell (Perturbation) Model Library☆22Updated last week
- ☆26Updated 9 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- A model developed for the generation of scRNA-seq data☆38Updated 2 months ago
- single cell foundation model for Gene network inference and more☆24Updated this week
- Models and datasets for perturbational single-cell omics☆143Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆55Updated last month
- Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆10Updated 2 weeks ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆50Updated 5 months ago
- ☆51Updated 2 months ago
- Create cell sentences from sequencing data☆21Updated 3 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 2 months ago
- ☆72Updated last year
- ☆28Updated last year
- ☆15Updated last month
- ☆46Updated 9 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆17Updated last month
- Transformer for One-Stop Interpretable Cell-type Annotation☆131Updated 8 months ago
- ☆45Updated 2 months ago
- single cell foundation model for Gene network inference and more☆13Updated 2 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆67Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆93Updated this week
- ☆48Updated 7 months ago
- ☆16Updated 3 years ago
- ☆37Updated 11 months ago