Alternatives and similar repositories for scEval

Users that are interested in scEval are comparing it to the libraries listed below

• Liu-Hy / GenoTEX
  GenoTEX: An expert-curated benchmark for evaluating LLM agents on real-world gene expression analysis tasks. (MLCB 2025 Oral)
  ☆62Updated 2 months ago
• LirongWu / MAPE-PPI
  Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironme…
  ☆264Updated last year
• EperLuo / scDiffusion-X
  Diffusion Model for Single-Cell Multiome Data Generation and Analysis
  ☆26Updated 2 weeks ago
• joybio / multiPrime
  multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based versio…
  ☆522Updated 10 months ago
• rnasys / LAMAR
  A Foundation Language Model For Multilayer Regulation of RNA
  ☆18Updated last month
• See-You-Soon-111 / zkp-temp
  一个零知识证明协议的简易实现
  ☆42Updated 2 weeks ago
• HelloWorldLTY / scELMo
  [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
  ☆19Updated 2 months ago
• cmzuo11 / stMVC
  ☆11Updated last year
• xqz614 / Awesome-Agentic-Clinical-Dialogue
  Resource collection of medical agent for clinical dialogue and health
  ☆148Updated last week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• microsoft / zero-shot-scfoundation
  ☆76Updated last year
• mlbio-epfl / systema
  ☆46Updated 5 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆100Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆81Updated 10 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆86Updated 2 weeks ago
• yangyn533 / 3UTRBERT
  ☆17Updated last year
• trashTian / MuLAAIP
  The implementation of our ICME 2025 paper "Multi-Modality Representation Learning for Antibody-Antigen Interactions Prediction"
  ☆230Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆33Updated 5 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆171Updated 3 years ago
• jsxlei / scCLIP
  ☆32Updated last year
• biomed-AI / CellFM
  ☆90Updated 4 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆234Updated 10 months ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆42Updated 5 months ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆18Updated last month
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆113Updated last week
• snap-stanford / SATURN
  ☆149Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆139Updated last month
• xCompass-AI / GeneCompass
  GeneCompass
  ☆103Updated 3 weeks ago
• jkobject / geneformer
  ☆88Updated 4 months ago