gao-lab / GLUELinks
Graph-linked unified embedding for single-cell multi-omics data integration
☆432Updated 3 weeks ago
Alternatives and similar repositories for GLUE
Users that are interested in GLUE are comparing it to the libraries listed below
Sorting:
- Benchmarking analysis of data integration tools☆392Updated last month
- This is the alpha version of the CellOracle package☆397Updated 10 months ago
- ☆335Updated 5 months ago
- Reference mapping for single-cell genomics☆387Updated last month
- A tool for semi-automatic cell type classification☆424Updated last week
- Spatial alignment of single cell transcriptomic data.☆333Updated 4 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆473Updated last week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆309Updated 9 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆412Updated 2 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆386Updated last month
- ☆347Updated this week
- Scanpy Tutorials.☆228Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆223Updated 4 months ago
- ☆334Updated last year
- Single cell perturbation prediction☆323Updated 11 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆443Updated 5 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆384Updated 2 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆241Updated last year
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆277Updated 8 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆224Updated 8 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆243Updated 3 weeks ago
- Single-cell perturbation analysis☆212Updated last week
- scripts and notebooks from sanbomics☆448Updated 11 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆144Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆318Updated last month
- A novel machine learning pipeline to analyse spatial transcriptomics data☆234Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- A toolkit of spatial transcriptomic analysis.☆265Updated 3 weeks ago
- ☆367Updated 9 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆553Updated 4 months ago