gao-lab / GLUELinks
Graph-linked unified embedding for single-cell multi-omics data integration
☆415Updated last week
Alternatives and similar repositories for GLUE
Users that are interested in GLUE are comparing it to the libraries listed below
Sorting:
- Benchmarking analysis of data integration tools☆363Updated 5 months ago
- ☆319Updated last month
- Reference mapping for single-cell genomics☆370Updated last month
- ☆295Updated 2 months ago
- A tool for semi-automatic cell type classification☆375Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆458Updated 2 weeks ago
- Scanpy Tutorials.☆215Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆399Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆361Updated 5 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆337Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆362Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆197Updated this week
- Spatial alignment of single cell transcriptomic data.☆304Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆261Updated 4 months ago
- Perturbation Analysis in the scverse ecosystem.☆182Updated last week
- Single-cell epigenomics analysis tools☆263Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆428Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆218Updated 11 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆218Updated this week
- ☆206Updated last year
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆250Updated 4 months ago
- ☆316Updated last year
- A toolkit of spatial transcriptomic analysis.☆253Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆227Updated 5 months ago
- RNA Velocity generalized through dynamical modeling☆447Updated 4 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆514Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆197Updated 3 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆659Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆548Updated 2 weeks ago