gao-lab / GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
☆384Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for GLUE
- ☆260Updated last month
- Benchmarking analysis of data integration tools☆309Updated last month
- ☆166Updated this week
- This is the alpha version of the CellOracle package☆313Updated last week
- Reference mapping for single-cell genomics☆335Updated 3 weeks ago
- Scanpy Tutorials.☆188Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆421Updated 3 weeks ago
- A tool for semi-automatic cell type classification☆300Updated 5 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆321Updated last month
- Spatial alignment of single cell transcriptomic data.☆259Updated 5 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆321Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆201Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆382Updated 8 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆335Updated last month
- scripts and notebooks from sanbomics☆362Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆313Updated 5 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆407Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆306Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆489Updated 2 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆471Updated last week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆210Updated 3 months ago
- ☆278Updated 11 months ago
- RNA Velocity generalized through dynamical modeling☆418Updated last month
- Transformer for One-Stop Interpretable Cell-type Annotation☆131Updated 8 months ago
- Single-cell epigenomics analysis tools☆231Updated 3 weeks ago
- ☆159Updated 6 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆276Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆167Updated 2 months ago
- Perturbation Analysis in the scverse ecosystem.☆141Updated 3 weeks ago
- ☆345Updated 2 years ago