Single-Cell (Perturbation) Model Library
☆109May 5, 2026Updated last month
Alternatives and similar repositories for Benchmarking-Single-Cell-Perturbation
Users that are interested in Benchmarking-Single-Cell-Perturbation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Oct 14, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆90May 6, 2026Updated last month
- ☆86Feb 17, 2026Updated 4 months ago
- ☆342May 23, 2025Updated last year
- ☆468Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 27, 2025Updated 11 months ago
- ☆858Apr 20, 2025Updated last year
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆25Mar 12, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆375Feb 1, 2025Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 10 months ago
- Modeling complex perturbations with CellFlow☆144Updated this week
- A simulator for single-cell expression data guided by gene regulatory networks☆81May 8, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆103Mar 28, 2024Updated 2 years ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆26Mar 20, 2026Updated 2 months ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated last year
- ☆16Dec 18, 2024Updated last year
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆15Oct 20, 2023Updated 2 years ago
- ☆19May 23, 2025Updated last year
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- End-to-end analysis of spatial multi-omics data☆116May 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated last year
- Diffusion model for gene regulatory network inference.☆29Mar 20, 2026Updated 2 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- Arc Virtual Cell Atlas☆537Jun 10, 2026Updated last week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆165Nov 23, 2025Updated 6 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆108Apr 7, 2026Updated 2 months ago
- ☆69Jul 21, 2023Updated 2 years ago
- Distributed single-cell data analysis.☆39Jun 12, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆177Feb 25, 2025Updated last year
- ☆56Apr 20, 2025Updated last year
- Simple scVI implementation☆13May 25, 2026Updated 3 weeks ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 3 years ago
- ☆49Sep 23, 2025Updated 8 months ago
- ☆12Aug 29, 2024Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆27Jan 25, 2022Updated 4 years ago