Alternatives and similar repositories for Benchmarking-Single-Cell-Perturbation

Users that are interested in Benchmarking-Single-Cell-Perturbation are comparing it to the libraries listed below

• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆163Updated 3 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 6 months ago
• yhr91 / GEARS_misc
  ☆22Updated 11 months ago
• siyuh / Squidiff
  ☆13Updated 6 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆332Updated last week
• theislab / single-cell-transformer-papers
  ☆328Updated 4 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆293Updated 8 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆219Updated 7 months ago
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆85Updated last week
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆111Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆61Updated last week
• jkobject / geneformer
  ☆79Updated last month
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆22Updated 2 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆83Updated last week
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆72Updated 7 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• theislab / CFGen
  ☆23Updated last month
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 7 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆97Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆48Updated 2 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• Chen-Li-17 / CellPB
  ☆13Updated 9 months ago
• snap-stanford / SATURN
  ☆139Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆218Updated 3 months ago
• nitzanlab / biolord
  ☆84Updated last year
• cantinilab / scPRINT
  single cell foundation model
  ☆106Updated last week