Single-Cell (Perturbation) Model Library
☆129Jul 27, 2026Updated 2 months ago
Alternatives and similar repositories for Benchmarking-Single-Cell-Perturbation
Users that are interested in Benchmarking-Single-Cell-Perturbation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell perturbation effects prediction benchmark☆106Sep 14, 2026Updated last month
- Modeling complex perturbations with CellFlow☆162Updated this week
- ☆342Aug 16, 2026Updated 2 months ago
- ☆101Aug 10, 2026Updated 2 months ago
- ☆592Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆65Aug 23, 2026Updated last month
- ☆32Oct 14, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆419Feb 1, 2025Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆29Mar 20, 2026Updated 6 months ago
- ☆867Apr 20, 2025Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆107Mar 28, 2024Updated 2 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated last year
- ☆28Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆75Jan 14, 2026Updated 9 months ago
- A model developed for the generation of scRNA-seq data☆96Jan 21, 2026Updated 8 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated last week
- ☆15Jun 27, 2025Updated last year
- ☆18Jan 30, 2026Updated 8 months ago
- ☆20May 23, 2025Updated last year
- ☆96Jul 18, 2025Updated last year
- Conditional Monge Gap (2026; Nature Machine Intelligence)☆25Aug 10, 2026Updated 2 months ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆69Jan 12, 2026Updated 9 months ago
- Comprehensive suite for evaluating perturbation prediction models☆164Jul 27, 2026Updated 2 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 6 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- scDisInFact is a single-cell data integration and condition effect prediction framework☆18Sep 19, 2024Updated 2 years ago
- 🏃 The go-to single-cell Foundation Model☆164Aug 11, 2026Updated 2 months ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆17Nov 27, 2023Updated 2 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆156Aug 14, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆114Apr 7, 2026Updated 6 months ago
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆45Sep 3, 2025Updated last year
- ☆190Jan 30, 2026Updated 8 months ago
- Arc Virtual Cell Atlas☆635Sep 29, 2026Updated 2 weeks ago
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆190Feb 25, 2025Updated last year