crazyhottommy / awesome_spatial_omicsLinks
tools and notes for spatial omics
☆328Updated 8 months ago
Alternatives and similar repositories for awesome_spatial_omics
Users that are interested in awesome_spatial_omics are comparing it to the libraries listed below
Sorting:
- A package to help convert different single-cell data formats to each other☆445Updated last year
- Single cell RNA sequencing analysis course☆225Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆409Updated 3 months ago
- ☆276Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆299Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 2 weeks ago
- ☆360Updated 3 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆227Updated 8 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆391Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆365Updated 3 months ago
- Analysis of single cell RNA-seq data course☆158Updated 3 years ago
- T/B cell receptor sequencing analysis notes☆268Updated 11 months ago
- my notes for scATACseq analysis☆131Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated last week
- A tool for semi-automatic cell type classification☆425Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆384Updated 2 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆218Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆218Updated last year
- Scanpy Tutorials.☆228Updated this week
- Interpretation of cell states using reference single-cell maps☆298Updated 3 months ago
- A toolkit of spatial transcriptomic analysis.☆265Updated 3 weeks ago
- Benchmarking analysis of data integration tools☆392Updated 2 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆428Updated last week
- A toolkit for single-cell immune profiling☆354Updated last week
- High dimensional weighted gene co-expression network analysis☆443Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆297Updated 3 years ago
- Panoramic stitching of single cell data☆292Updated 4 months ago