crazyhottommy / awesome_spatial_omicsLinks
tools and notes for spatial omics
☆314Updated 6 months ago
Alternatives and similar repositories for awesome_spatial_omics
Users that are interested in awesome_spatial_omics are comparing it to the libraries listed below
Sorting:
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆367Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆439Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 3 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆394Updated last month
- ☆275Updated 10 months ago
- Single cell RNA sequencing analysis course☆221Updated last week
- Tutorial for scRNA-seq data analysis beginners using R☆214Updated 6 months ago
- Interpretation of cell states using reference single-cell maps☆292Updated last month
- my notes for scATACseq analysis☆132Updated last year
- T/B cell receptor sequencing analysis notes☆263Updated 9 months ago
- ☆358Updated 3 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆291Updated 2 years ago
- A tool for semi-automatic cell type classification☆404Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆295Updated 2 months ago
- Analysis of single cell RNA-seq data course☆146Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆330Updated this week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆377Updated 2 months ago
- Benchmarking analysis of data integration tools☆378Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆433Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆394Updated last week
- Community-provided extensions to Seurat☆344Updated 9 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆503Updated 2 weeks ago
- Scanpy Tutorials.☆220Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆354Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- A toolkit for single-cell immune profiling☆345Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- This is the alpha version of the CellOracle package☆378Updated 8 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆428Updated last month