☆342Aug 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for single-cell-transformer-papers
Users that are interested in single-cell-transformer-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆862Apr 20, 2025Updated last year
- ☆561Updated this week
- Single-Cell (Perturbation) Model Library☆128Jul 27, 2026Updated last month
- ☆1,621Apr 29, 2026Updated 4 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆154Mar 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆63May 30, 2024Updated 2 years ago
- ☆427Nov 23, 2025Updated 9 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆404Feb 1, 2025Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated 2 months ago
- Arc Virtual Cell Atlas☆586Aug 28, 2026Updated last week
- ☆362Dec 13, 2023Updated 2 years ago
- https://www.sc-best-practices.org☆1,259Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆335Jul 8, 2026Updated last month
- Paper collection for single cell foundation models☆41Mar 17, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Modeling complex perturbations with CellFlow☆159Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 9 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,848Updated this week
- ☆13Jun 4, 2023Updated 3 years ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆71Dec 29, 2024Updated last year
- A model developed for the generation of scRNA-seq data☆95Jan 21, 2026Updated 7 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆477Feb 9, 2026Updated 6 months ago
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 6 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single cell omics biology annotations☆61Updated this week
- Models and datasets for perturbational single-cell omics☆182Aug 19, 2022Updated 4 years ago
- ☆68Sep 13, 2024Updated last year
- Single-cell perturbation analysis☆339Updated this week
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆140Mar 18, 2022Updated 4 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆105Mar 28, 2024Updated 2 years ago
- ☆86Jan 9, 2026Updated 7 months ago
- Multi-omic single-cell optimal transport tools☆216Updated this week
- Single-cell perturbation effects prediction benchmark☆103May 6, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,683Updated this week
- Comprehensive suite for evaluating perturbation prediction models☆155Jul 27, 2026Updated last month
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago
- GeneCompass☆122Updated this week
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆387Updated this week
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆42May 19, 2026Updated 3 months ago
- This is the alpha version of the CellOracle package☆489Apr 30, 2026Updated 4 months ago