Alternatives and similar repositories for single-cell-transformer-papers

Users that are interested in single-cell-transformer-papers are comparing it to the libraries listed below

• OmicsML / awesome-foundation-model-single-cell-papers
  ☆286Updated last month
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆258Updated 4 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆193Updated 3 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆192Updated 2 weeks ago
• biomap-research / scFoundation
  ☆338Updated 4 months ago
• TencentAILabHealthcare / scBERT
  ☆315Updated last year
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆63Updated 2 weeks ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆358Updated 4 months ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆365Updated 2 weeks ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆356Updated 4 months ago
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆291Updated 3 weeks ago
• jkobject / geneformer
  ☆68Updated last week
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆411Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆141Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆152Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆128Updated 3 months ago
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆300Updated 11 months ago
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆178Updated this week
• Winnie09 / GPTCelltype
  ☆201Updated last year
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆335Updated last week
• xCompass-AI / GeneCompass
  GeneCompass
  ☆79Updated 2 weeks ago
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆213Updated last week
• BiomedicalMachineLearning / stLearn
  A novel machine learning pipeline to analyse spatial transcriptomics data
  ☆223Updated this week
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆369Updated 3 weeks ago
• yiqunchen / GenePT
  ☆261Updated last year
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆775Updated last month
• snap-stanford / SATURN
  ☆126Updated 11 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆393Updated 2 weeks ago
• BayraktarLab / cell2location
  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
  ☆358Updated 2 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated 4 months ago