theislab / single-cell-transformer-papers

Related projects ⓘ

Alternatives and complementary repositories for single-cell-transformer-papers

• OmicsML / awesome-foundation-model-single-cell-papers
  ☆167Updated last week
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆210Updated 3 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆164Updated this week
• biomap-research / scFoundation
  ☆266Updated 3 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆385Updated 9 months ago
• TencentAILabHealthcare / scBERT
  ☆278Updated 11 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆131Updated 8 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆309Updated this week
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆259Updated 5 months ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆335Updated 3 weeks ago
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆696Updated last month
• Winnie09 / GPTCelltype
  ☆160Updated 6 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆109Updated 2 months ago
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆188Updated last week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆65Updated 6 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆63Updated 4 months ago
• aristoteleo / dynamo-release
  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …
  ☆421Updated 3 weeks ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆109Updated this week
• jkobject / geneformer
  ☆37Updated 11 months ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆313Updated last week
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆302Updated 5 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆43Updated 2 weeks ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆364Updated this week
• BayraktarLab / cell2location
  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
  ☆321Updated last month
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆143Updated 2 years ago
• aristoteleo / spateo-release
  Spatiotemporal modeling of spatial transcriptomics
  ☆217Updated this week
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆321Updated this week
• yiqunchen / GenePT
  ☆178Updated 8 months ago
• snap-stanford / SATURN
  ☆108Updated 4 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆384Updated 8 months ago