☆340May 23, 2025Updated 10 months ago
Alternatives and similar repositories for single-cell-transformer-papers
Users that are interested in single-cell-transformer-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆846Apr 20, 2025Updated 11 months ago
- ☆426Jan 21, 2026Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆99Mar 30, 2026Updated 2 weeks ago
- ☆1,537Nov 12, 2025Updated 5 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Transformer for One-Stop Interpretable Cell-type Annotation☆151Mar 4, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆354Feb 1, 2025Updated last year
- ☆405Nov 23, 2025Updated 4 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆112Mar 27, 2026Updated 2 weeks ago
- Arc Virtual Cell Atlas☆510Feb 12, 2026Updated 2 months ago
- ☆353Dec 13, 2023Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆159Nov 23, 2025Updated 4 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆250Feb 26, 2026Updated last month
- Paper collection for single cell foundation models☆36Mar 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- https://www.sc-best-practices.org☆1,181Apr 8, 2026Updated last week
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆68Dec 29, 2024Updated last year
- Modeling complex perturbations with CellFlow☆130Apr 8, 2026Updated last week
- ☆13Jun 4, 2023Updated 2 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,709Updated this week
- Graph-linked unified embedding for single-cell multi-omics data integration☆460Feb 9, 2026Updated 2 months ago
- Spatiotemporal modeling of spatial transcriptomics☆334Feb 25, 2026Updated last month
- ☆41Dec 31, 2025Updated 3 months ago
- ☆65Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A model developed for the generation of scRNA-seq data☆87Jan 21, 2026Updated 2 months ago
- Models and datasets for perturbational single-cell omics☆175Aug 19, 2022Updated 3 years ago
- Multi-omic single-cell optimal transport tools☆200Apr 6, 2026Updated last week
- ☆81Jan 9, 2026Updated 3 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆90Updated this week
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆135Mar 18, 2022Updated 4 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆102Mar 28, 2024Updated 2 years ago
- Single cell omics biology annotations☆55Feb 26, 2026Updated last month
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆102Jul 6, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,597Updated this week
- GeneCompass☆114Feb 10, 2026Updated 2 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆388Mar 19, 2026Updated 3 weeks ago
- Single-cell perturbation analysis☆307Updated this week
- ☆43Sep 23, 2025Updated 6 months ago
- ☆127Mar 19, 2026Updated 3 weeks ago
- End-to-end analysis of spatial multi-omics data☆109Jan 26, 2026Updated 2 months ago