brainglobe / cellfinder
Automated 3D cell detection in very large images
☆190Updated last week
Alternatives and similar repositories for cellfinder:
Users that are interested in cellfinder are comparing it to the libraries listed below
- Automated 3D brain registration with support for multiple species and atlases.☆133Updated last week
- A Python interface to access neuroanatomical atlases☆141Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆34Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- ☆45Updated 4 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Histology processing☆65Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆72Updated 3 weeks ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆133Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆119Updated this week
- A Python API for working with Neurodata stored in the NWB Format☆189Updated this week
- ☆51Updated 6 months ago
- ☆18Updated 3 years ago
- cell detection in calcium imaging recordings☆373Updated 2 months ago
- a visualization method for neural data☆211Updated 5 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Registration of cells across sessions.☆73Updated 7 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated this week
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- ☆19Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago