brainglobe / cellfinderLinks
Automated 3D cell detection in very large images
☆219Updated 2 weeks ago
Alternatives and similar repositories for cellfinder
Users that are interested in cellfinder are comparing it to the libraries listed below
Sorting:
- Automated 3D brain registration with support for multiple species and atlases.☆139Updated 2 weeks ago
- A Python interface to access neuroanatomical atlases☆165Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆107Updated 3 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- ☆34Updated 6 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- ☆45Updated 5 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆54Updated 2 years ago
- ☆52Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated 2 weeks ago
- cell detection in calcium imaging recordings☆414Updated 2 months ago
- Brainways☆21Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated 2 weeks ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated last month
- Histology processing☆71Updated 2 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆18Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 8 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆30Updated 2 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆41Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago