MouseLand / cellposeLinks
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
☆1,924Updated last week
Alternatives and similar repositories for cellpose
Users that are interested in cellpose are comparing it to the libraries listed below
Sorting:
- StarDist - Object Detection with Star-convex Shapes☆1,118Updated 5 months ago
- Segment Anything for Microscopy☆605Updated last month
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆619Updated last week
- Deep Learning Library for Single Cell Analysis☆467Updated last year
- An open-source application for biological image analysis☆1,055Updated this week
- Use ImageJ from Python☆521Updated this week
- Notebooks to illustrate how BigFISH is working.☆11Updated 3 years ago
- ☆201Updated 2 years ago
- QuPath - Open-source bioimage analysis for research☆1,230Updated last week
- Detection, colocalization, and quantification of spots / puncta☆14Updated 2 years ago
- TrackMate is your buddy for your everyday tracking.☆215Updated 2 weeks ago
- Open source tools for computational pathology - Nature BME☆1,475Updated 6 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆122Updated 2 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated last week
- Image restoration for fluorescence microscopy☆319Updated last year
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆652Updated 2 years ago
- ilastik-shell, applets, and workflows to string them together.☆384Updated last week
- An introduction to deepcell and deep learning☆154Updated last year
- Track cells and build cell lineages☆35Updated last year
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆232Updated 8 months ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆479Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 9 months ago
- Open source Python library for building bioimage analysis pipelines☆185Updated this week
- A napari plugin to process and analyse images with chatGPT!☆280Updated last month
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆145Updated 6 months ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆199Updated 5 years ago
- napari: a fast, interactive, multi-dimensional image viewer for python☆2,519Updated this week
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆217Updated this week
- A Python toolkit for pathology image analysis algorithms.☆452Updated this week