Alternatives and similar repositories for cellpose

Users that are interested in cellpose are comparing it to the libraries listed below

• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆1,158Updated last month
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆635Updated this week
• HenriquesLab / ZeroCostDL4Mic
  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
  ☆622Updated last month
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆472Updated last year
• CellProfiler / CellProfiler
  An open-source application for biological image analysis
  ☆1,083Updated this week
• imagej / pyimagej
  Use ImageJ from Python
  ☆521Updated 2 months ago
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆11Updated 3 years ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆136Updated last week
• sartorius-research / LIVECell
  ☆205Updated 2 years ago
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆223Updated last month
• stjude / punctatools
  Detection, colocalization, and quantification of spots / puncta
  ☆14Updated 2 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆190Updated this week
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆232Updated 2 years ago
• qupath / qupath
  QuPath - Open-source bioimage analysis for research
  ☆1,276Updated this week
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆238Updated 11 months ago
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆323Updated last month
• napari / napari
  napari: a fast, interactive, multi-dimensional image viewer for python
  ☆2,581Updated this week
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆356Updated 5 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆155Updated last year
• vqdang / hover_net
  Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
  ☆678Updated 2 years ago
• instanseg / instanseg
  ☆207Updated 2 weeks ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated this week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated last month
• oist / Usiigaci
  Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
  ☆203Updated 5 years ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year
• jono-m / OrganoID
  ☆28Updated 2 years ago
• TissueImageAnalytics / tiatoolbox
  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
  ☆501Updated last week
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆146Updated 8 months ago
• prov-gigapath / prov-gigapath
  Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
  ☆566Updated 8 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆164Updated last week