Alternatives and similar repositories for cellpose

Users that are interested in cellpose are comparing it to the libraries listed below

• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆1,076Updated 2 months ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆463Updated 11 months ago
• HenriquesLab / ZeroCostDL4Mic
  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
  ☆611Updated 4 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆571Updated last week
• CellProfiler / CellProfiler
  An open-source application for biological image analysis
  ☆1,014Updated this week
• imagej / pyimagej
  Use ImageJ from Python
  ☆510Updated last week
• sartorius-research / LIVECell
  ☆195Updated 2 years ago
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆11Updated 2 years ago
• qupath / qupath
  QuPath - Open-source bioimage analysis for research
  ☆1,189Updated last week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆178Updated this week
• mahmoodlab / CLAM
  Open source tools for computational pathology - Nature BME
  ☆1,403Updated 3 months ago
• stjude / punctatools
  Detection, colocalization, and quantification of spots / puncta
  ☆13Updated 2 years ago
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆314Updated 10 months ago
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆231Updated 5 months ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆151Updated 9 months ago
• scverse / squidpy
  Spatial Single Cell Analysis in Python
  ☆502Updated last week
• TissueImageAnalytics / tiatoolbox
  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
  ☆455Updated this week
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆206Updated last week
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆220Updated last year
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆117Updated last week
• DigitalSlideArchive / HistomicsTK
  A Python toolkit for pathology image analysis algorithms.
  ☆438Updated last week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆215Updated 6 months ago
• vqdang / hover_net
  Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
  ☆620Updated last year
• bowang-lab / scGPT
  ☆1,295Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆177Updated this week
• mahmoodlab / HIPT
  Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
  ☆576Updated last year
• instanseg / instanseg
  ☆176Updated last month
• prov-gigapath / prov-gigapath
  Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
  ☆518Updated 2 months ago
• DeepTrackAI / DeepTrack2
  DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…
  ☆207Updated this week